View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_111 (Length: 242)
Name: NF8888_low_111
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_111 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 39579208 - 39579420
Alignment:
| Q |
18 |
cattcatgggtaagaaataatgcatcaaggtctagccactcctcatcattgaacaagagtcgtagatcacaaactaaaacatgatttggttcaattctga |
117 |
Q |
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| T |
39579208 |
cattcatgggtaagaaataatgcatcaaggtctagccactcctcatcattgaacaagagtcgtagatcacaaactaaaacatgatttggttcaattctga |
39579307 |
T |
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| Q |
118 |
acttgtaatagcctttgtgagggagacattgaccgttgataaccaagtgaagctcaacaagttgccgataagatcttcttttcttcccaacgacactttg |
217 |
Q |
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| T |
39579308 |
acttgtaatagcctttgtgagggagacattgaccgttgataaccaagtgaagctcaacaagttgccgatgagatcttcttttcttcccaacgacactttg |
39579407 |
T |
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| Q |
218 |
gaacgaacaccaa |
230 |
Q |
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||||||||||||| |
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| T |
39579408 |
gaacgaacaccaa |
39579420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 39623137 - 39622981
Alignment:
| Q |
29 |
aagaaataatgcatcaaggtctagccactcctcatcattgaacaagagtcgtagatcacaaactaaaacatgatttggttcaattctgaacttgtaatag |
128 |
Q |
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||||| ||||||||||||| | ||||||||||||||| ||||||| ||| | | |||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
39623137 |
aagaagtaatgcatcaaggcccagccactcctcatcactgaacaatagttgcaaatcacaaactaacacatgattttgttcaattctgaagttgtaataa |
39623038 |
T |
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| Q |
129 |
cctttgtgagggagacattgaccgttgataaccaagtgaagctcaacaagttgccga |
185 |
Q |
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||||| | ||| ||| |||| || |||||||||||||||||||||||| ||||| |
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| T |
39623037 |
cctttacggcggacacagagaccatttataaccaagtgaagctcaacaagtagccga |
39622981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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