View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_112 (Length: 241)
Name: NF8888_low_112
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31188089 - 31187865
Alignment:
| Q |
1 |
tttattcggattctataatctaaaatatttcaacctatttttgaagtttttatgttgttcgtaatgtataattcaaactgcataaagtgtgtgagaaatt |
100 |
Q |
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| T |
31188089 |
tttattcggattctataatctaaaatatttcaacctatttttgaagtttttatgttgttcgtaatgtataatccaaactgcataaagcgtgtgagaaatt |
31187990 |
T |
|
| Q |
101 |
tataggatggaaaaagaagcagtcttaataatttagttgaaaaccataactctaacgaattatgagtgtagtacatgttttggcaaaatatacttatatt |
200 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31187989 |
tataggatggaaaaagaaaccgtcttaataatttagttgaaaaccataactctaacgaattatgagtgtggtacatgttttggcaaaatatacttatatt |
31187890 |
T |
|
| Q |
201 |
tatttgatcattatagtagcaattg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
31187889 |
tatttgatcattatagtagcaattg |
31187865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 43751792 - 43751841
Alignment:
| Q |
3 |
tattcggattctataatctaaaatatttcaacctatttttgaagttttta |
52 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| | ||||||||| ||||| |
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|
| T |
43751792 |
tattcggattctaaaatctaaaatattttaacgtgtttttgaagatttta |
43751841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 3255206 - 3255158
Alignment:
| Q |
3 |
tattcggattctataatctaaaatatttcaacctatttttgaagttttt |
51 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| |||| |
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|
| T |
3255206 |
tattcggattctaaaatctaaaatatttcaatatatttttgaaggtttt |
3255158 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 20207240 - 20207190
Alignment:
| Q |
3 |
tattcggattctataatctaaaatatttcaacctatttttgaagtttttat |
53 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
20207240 |
tattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat |
20207190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 22101263 - 22101213
Alignment:
| Q |
3 |
tattcggattctataatctaaaatatttcaacctatttttgaagtttttat |
53 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| | |||||||||||||||| |
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|
| T |
22101263 |
tattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat |
22101213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 10696429 - 10696380
Alignment:
| Q |
3 |
tattcggattctataatctaaaatatttcaacctatttttgaagttttta |
52 |
Q |
| |
|
|||||| |||||| |||| ||||||||||||| ||||||||||| ||||| |
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|
| T |
10696429 |
tattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttta |
10696380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 435030 - 434989
Alignment:
| Q |
11 |
ttctataatctaaaatatttcaacctatttttgaagttttta |
52 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||||| |
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|
| T |
435030 |
ttctaaaatctaaaatatttcaacatgtttttgaagttttta |
434989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 7439141 - 7439097
Alignment:
| Q |
10 |
attctataatctaaaatatttcaacctatttttgaagtttttatg |
54 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||||||| ||||||| |
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|
| T |
7439141 |
attctaaaatctaaaatatttcaacgtgtttttgaaggttttatg |
7439097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28503323 - 28503271
Alignment:
| Q |
2 |
ttattcggattctataatctaaaatatttcaacctatttttgaagtttttatg |
54 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||| |||||| || ||||||||| |
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|
| T |
28503323 |
ttattcgaattctaaaatctgaaatatttcaacgtattttggaggtttttatg |
28503271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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