View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_116 (Length: 239)

Name: NF8888_low_116
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_116
NF8888_low_116
[»] scaffold0536 (2 HSPs)
scaffold0536 (19-239)||(6038-6258)
scaffold0536 (19-239)||(10022-10242)
[»] chr4 (4 HSPs)
chr4 (19-237)||(48911872-48912090)
chr4 (125-230)||(48962732-48962837)
chr4 (144-230)||(48958585-48958671)
chr4 (110-239)||(48965758-48965887)
[»] chr2 (3 HSPs)
chr2 (143-232)||(13440636-13440725)
chr2 (144-230)||(13448801-13448887)
chr2 (144-228)||(13455274-13455358)
[»] chr6 (1 HSPs)
chr6 (110-229)||(12589787-12589906)
[»] chr5 (2 HSPs)
chr5 (133-239)||(28385763-28385869)
chr5 (133-229)||(12541124-12541220)
[»] chr8 (1 HSPs)
chr8 (131-230)||(12641120-12641219)


Alignment Details
Target: scaffold0536 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 6038 - 6258
Alignment:
Q  19 gtaattcctggtcttcctcattctattgccatgaatgcagctccgccgaagcagatgagtgacttattggaagcgcttttggagacggttttcaaaagca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6038 gtaattcctggtcttcctcattctattgccatgaatgcagctccgccgaagcagatgagtgacttattggaagcgcttttggagacggttttcaaaagca 6137  T
Q  119 acggaatcattgttaacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgcc 218  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  6138 acggaatcattgttaacaatttttctgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggc 6237  T
Q  219 ttctcttattcgtagaactgt 239  Q
    |||||||||||||||||||||    
T  6238 ttctcttattcgtagaactgt 6258  T

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Target: scaffold0536; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 10022 - 10242
Alignment:
Q  19 gtaattcctggtcttcctcattctattgccatgaatgcagctccgccgaagcagatgagtgacttattggaagcgcttttggagacggttttcaaaagca 118  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||  | |||| || || |||||||| ||||||||||||      
T  10022 gtaattcctggtcttcctcattctattgtcatgaatgcaacaccgcctaagcagatgagtgaaatcttgggagagcgtttggagatggttttcaaaagtc 10121  T
Q  119 acggaatcattgttaacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgcc 218  Q
    | || ||| |||| || |||||||  |||||||||||| || || |||||||||||||| |||||||||||||||| ||||||||||||||| ||||  |    
T  10122 aagggatccttgtcaataattttgtagaacttgacggtaaatagcacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttagtccagc 10221  T
Q  219 ttctcttattcgtagaactgt 239  Q
    || |||| |||||||||||||    
T  10222 ttatcttgttcgtagaactgt 10242  T

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Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 48911872 - 48912090
Alignment:
Q  19 gtaattcctggtcttcctcattctattgccatgaatgcagctccgccgaagcagatgagtgacttattggaagcgcttttggagacggttttcaaaagca 118  Q
    |||||||||  |||||||||||||||||||||||||||||| || ||||||||| ||||| | ||||||||||||||| | ||||| ||||||||||| |    
T  48911872 gtaattcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaattattggaagcgcttcttgagacagttttcaaaagta 48911971  T
Q  119 acggaatcattgttaacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgcc 218  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||  |    
T  48911972 acggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagc 48912071  T
Q  219 ttctcttattcgtagaact 237  Q
    |||||||||||| ||||||    
T  48912072 ttctcttattcgcagaact 48912090  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 48962837 - 48962732
Alignment:
Q  125 tcattgttaacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgccttctct 224  Q
    ||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |||||   ||||||    
T  48962837 tcattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctct 48962738  T
Q  225 tattcg 230  Q
    ||||||    
T  48962737 tattcg 48962732  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 48958671 - 48958585
Alignment:
Q  144 tgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgccttctcttattcg 230  Q
    ||||||||| |||||||||| ||||||||||||| ||||||  ||||||||||| | |||||||||||||||  |||||||||||||    
T  48958671 tgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacgggtcacaaggtttggcatcttggtcctgcttctcttattcg 48958585  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 48965887 - 48965758
Alignment:
Q  110 tcaaaagcaacggaatcattgttaacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatct 209  Q
    ||||||| || ||| ||||||| |||||||| ||||| |||||||| |||||||||||  || | || | ||  |  |||||||| || |||||||||||    
T  48965887 tcaaaagtaatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaaatattatgtgagtagcacgggtcataaggcttggcatct 48965788  T
Q  210 tggtccgccttctcttattcgtagaactgt 239  Q
    ||||||  ||||||||||||||| ||||||    
T  48965787 tggtccagcttctcttattcgtaaaactgt 48965758  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 13440725 - 13440636
Alignment:
Q  143 ctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgccttctcttattcgta 232  Q
    ||||||||||||| ||||||| |||| ||||||| |||||||| ||||||||||| | ||||||||| |||||  |||||||||||||||    
T  13440725 ctgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgta 13440636  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 13448887 - 13448801
Alignment:
Q  144 tgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgccttctcttattcg 230  Q
    ||||||||| || ||||||| |||  |||||||||||||| | ||||||||||| | |||||||||||||||  |||||||||||||    
T  13448887 tgaacttgatggagaagagtgcatacaacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcg 13448801  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 13455358 - 13455274
Alignment:
Q  144 tgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgccttctcttatt 228  Q
    |||| |||| || ||||||| |||| |||||||||| ||||| || |||||||| | ||||||| |||||||  |||||||||||    
T  13455358 tgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatt 13455274  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 12589787 - 12589906
Alignment:
Q  110 tcaaaagcaacggaatcattgttaacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatct 209  Q
    ||||||| || ||| ||||||||||||| || ||||||||||| ||  ||||||   || ||||||| |||||||| || |||||||| |||||||||||    
T  12589787 tcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatct 12589886  T
Q  210 tggtccgccttctcttattc 229  Q
    ||||||  ||||||||||||    
T  12589887 tggtccagcttctcttattc 12589906  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 28385869 - 28385763
Alignment:
Q  133 aacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgccttctcttattcgta 232  Q
    ||||| |||| ||||||||| || |||||||   || |||||||||||||||| ||||||||||| |||||||||||||||||  ||||  |||||||||    
T  28385869 aacaactttgttgaacttgatggagaagagtgtgtcaaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcgta 28385770  T
Q  233 gaactgt 239  Q
     ||||||    
T  28385769 aaactgt 28385763  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 12541220 - 12541124
Alignment:
Q  133 aacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgccttctcttattc 229  Q
    ||||| |||| ||||||||| || |||||||   || |||||||||||||||| ||||||||||| |||||||||||||||||  ||||| ||||||    
T  12541220 aacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattc 12541124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 12641120 - 12641219
Alignment:
Q  131 ttaacaattttgctgaacttgacggtgaagagtacatcgaacactacgagaaaactacgggtcacaaagcttggcatcttggtccgccttctcttattcg 230  Q
    ||||||| |||| ||||||||| |||||||| | |||| ||||||| |||||||| | |||| |||| |||||||||||||||||  ||| |||||||||    
T  12641120 ttaacaactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtccaacttgtcttattcg 12641219  T

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