View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_127 (Length: 226)

Name: NF8888_low_127
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_127
NF8888_low_127
[»] chr3 (2 HSPs)
chr3 (1-226)||(42107572-42107797)
chr3 (89-133)||(2144620-2144664)
[»] chr2 (3 HSPs)
chr2 (67-166)||(38051193-38051292)
chr2 (60-105)||(38022573-38022618)
chr2 (89-133)||(12432884-12432928)
[»] chr8 (2 HSPs)
chr8 (60-105)||(27325552-27325597)
chr8 (67-105)||(15820615-15820653)
[»] chr6 (2 HSPs)
chr6 (60-105)||(3639633-3639678)
chr6 (89-133)||(10144760-10144804)
[»] chr5 (3 HSPs)
chr5 (60-105)||(8962139-8962184)
chr5 (74-134)||(7506301-7506362)
chr5 (60-101)||(30700012-30700053)
[»] chr1 (2 HSPs)
chr1 (60-105)||(16305656-16305701)
chr1 (74-111)||(47980596-47980633)
[»] scaffold0075 (1 HSPs)
scaffold0075 (89-133)||(12177-12221)
[»] chr7 (1 HSPs)
chr7 (89-133)||(28300799-28300843)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 42107797 - 42107572
Alignment:
Q  1 tttacaaacaaaattaaaccatttttgggctactattttattaaaagctatataatctgcaattccatatatgatagtattttaaaataagggtaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42107797 tttacaaacaaaattaaaccatttttgggctactattttattataagctatataatatgcaattccatatatgatagtattttaaaataagggtaaaaat 42107698  T
Q  101 ggaattaaaaattataatgtataccattccgtccgttttcaaacaacggaatggagagtttgttccgctctgccatagaatacccaaatagtgggatgga 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42107697 ggaattaaaaattataatgtataccattccgtccattttcaaacaatggaatggagagtttgttccgctctgccatagaatactcaaatagtgggatgga 42107598  T
Q  201 aactctatttcattccattctgttcc 226  Q
    |||||||||||||||| ||| |||||    
T  42107597 aactctatttcattccgttccgttcc 42107572  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 2144664 - 2144620
Alignment:
Q  89 aagggtaaaaatggaattaaaaattataatgtataccattccgtc 133  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  2144664 aagggtaaaaatggaataaaaagttataatttattccattccgtc 2144620  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 38051292 - 38051193
Alignment:
Q  67 atatatgatagtattttaaaataagggtaaaaatggaattaaaaattataatgtataccattccgtccgtttt-caaacaacggaatggagagtttgttc 165  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||  ||||  ||||||||| ||||||| ||||| ||||||||||||    
T  38051292 atatatgatagtatttttaaataagggtaaaaatggaa-taaaaagtataatttatttcattttgtccgttttccaaacaatggaatagagagtttgttc 38051194  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 38022618 - 38022573
Alignment:
Q  60 caattccatatatgatagtattttaaaataagggtaaaaatggaat 105  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||    
T  38022618 caattctatatatgatagtatttttaaataagggtaaaaatggaat 38022573  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 12432928 - 12432884
Alignment:
Q  89 aagggtaaaaatggaattaaaaattataatgtataccattccgtc 133  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  12432928 aagggtaaaaatggaataaaaagttataatttattccattccgtc 12432884  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 27325552 - 27325597
Alignment:
Q  60 caattccatatatgatagtattttaaaataagggtaaaaatggaat 105  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||    
T  27325552 caattctatatatgatagtatttttaaataagggtaaaaatggaat 27325597  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 15820615 - 15820653
Alignment:
Q  67 atatatgatagtattttaaaataagggtaaaaatggaat 105  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  15820615 atatatgatactatttttaaataagggtaaaaatggaat 15820653  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 3639633 - 3639678
Alignment:
Q  60 caattccatatatgatagtattttaaaataagggtaaaaatggaat 105  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||    
T  3639633 caattctatatatgatagtatttttaaataagggtaaaaatggaat 3639678  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 10144760 - 10144804
Alignment:
Q  89 aagggtaaaaatggaattaaaaattataatgtataccattccgtc 133  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  10144760 aagggtaaaaatggaataaaaagttataatttattccattccgtc 10144804  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 8962139 - 8962184
Alignment:
Q  60 caattccatatatgatagtattttaaaataagggtaaaaatggaat 105  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||    
T  8962139 caattctatatatgatagtatttttaaataagggtaaaaatggaat 8962184  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 7506362 - 7506301
Alignment:
Q  74 atagtattttaaaataagggtaaaaatggaattaa-aaattataatgtataccattccgtcc 134  Q
    |||||||||| |||||||||||||||||||||||| |||||||||  | | |||||||||||    
T  7506362 atagtatttttaaataagggtaaaaatggaattaagaaattataacttgttccattccgtcc 7506301  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 30700012 - 30700053
Alignment:
Q  60 caattccatatatgatagtattttaaaataagggtaaaaatg 101  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  30700012 caattctatatatgatagtatttttaaataagggtaaaaatg 30700053  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 16305701 - 16305656
Alignment:
Q  60 caattccatatatgatagtattttaaaataagggtaaaaatggaat 105  Q
    |||||| ||||| |||| |||||| |||||||||||||||||||||    
T  16305701 caattctatatacgatactatttttaaataagggtaaaaatggaat 16305656  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 47980596 - 47980633
Alignment:
Q  74 atagtattttaaaataagggtaaaaatggaattaaaaa 111  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  47980596 atagtatttttaaataacggtaaaaatggaattaaaaa 47980633  T

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Target: scaffold0075 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 12221 - 12177
Alignment:
Q  89 aagggtaaaaatggaattaaaaattataatgtataccattccgtc 133  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  12221 aagggtaaaaatggaataaaaagttataatttattccattccgtc 12177  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 28300843 - 28300799
Alignment:
Q  89 aagggtaaaaatggaattaaaaattataatgtataccattccgtc 133  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  28300843 aagggtaaaaatggaataaaaagttataatttattccattccgtc 28300799  T

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