View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_128 (Length: 218)
Name: NF8888_low_128
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_128 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 17170036 - 17170218
Alignment:
| Q |
14 |
ttatactcactaaacaaactaactgtgttttgatctttttaaaatagcgtctagaaaataagctataaacttatgatgaaaacacggttactaaatcaat |
113 |
Q |
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| T |
17170036 |
ttatactcactaaacaaact----gtgttttgatctttttaaaatagcgtctaaaaaataagctataaacttatgatgaaaacacggttactaaatgaat |
17170131 |
T |
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| Q |
114 |
cttttttagtcagacgaccttataaactataagctataaatttagatgaatgagagtgataagaaaggtgctaaccaatatagagaa |
200 |
Q |
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| T |
17170132 |
cttttttagtcagacgaccttataaactataagctataaatttagatgaatgagagtgataagaaaggtgctaaccaagatagagaa |
17170218 |
T |
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