View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_14 (Length: 689)
Name: NF8888_low_14
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 588; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Complemental strand, 26099881 - 26099226
Alignment:
| Q |
18 |
aaaagatctgccaaggtatatgagagaatagaatagaataggagagatggtgattcacttgaaatcagtataagacatagatgaattcatgcgtacatgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099881 |
aaaagatctgccaaggtatatgagagaatagaatagaatagaagagacggtgattcacttgaaatcagtataagacatagatgaattcatgcgtacatgt |
26099782 |
T |
|
| Q |
118 |
gttagagcccagtaaaatgtatacataggctattttgtaatgattttgtatcactatctaagcatgtcttctcctttggcatgtggtagttaataaaatc |
217 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099781 |
gtaatagcccagtaaaatgtatacataggctattttgtaatgattttgtatcactatctaagcatgtcttctcctttggcatgtggtagttaataaaatc |
26099682 |
T |
|
| Q |
218 |
tgctttgcttttccaaaataacttagaattgcttgattactttgttacgagtcctaccgtaccaaattaagttcaatgaatttagaaactttatactcaa |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
26099681 |
tgctttgctttaccaaaataacttagaattgcttgattactttgttacgagtcctaccataccaaattaggttcaatgaatttagaaactttatactcaa |
26099582 |
T |
|
| Q |
318 |
atgatgctaatcaccatctcaaatcgtgctcagagttctgcccggttaagtgataccggggagctacattccgaagcattccccacaaaatctatattta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099581 |
atgatgctaatcaccatctcaaatcgtgctcagagttctgccctgttaagtgataccggggagctacattccgaagcattccccacaaaatctatattta |
26099482 |
T |
|
| Q |
418 |
ccatccccaccaaaatctggcagaaatgtgtcggagcctcagtcaagattccgaagatacattctaaagtttactacttcccacaaggtcacttaaaaca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099481 |
ccatccccaccaaaatctggcagaaatgtgtcggagcctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcacttaaaaca |
26099382 |
T |
|
| Q |
518 |
tgtctcaactcacacaatcatcacccttcttcattgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagat |
617 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26099381 |
tgtctcccctcacacaatcatcacccttcttcattgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagat |
26099282 |
T |
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| Q |
618 |
gaagtttttgccaaactcctcctcactcccgtaacggaaggccatggccatgaaca |
673 |
Q |
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||||| ||||||||||| |||||||||||||||| ||| ||||||||||| ||||| |
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| T |
26099281 |
gaagtctttgccaaactgctcctcactcccgtaatggatggccatggccacgaaca |
26099226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
| Q |
459 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
508 |
Q |
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|
||||||||||||||||| || |||||||||||||||||||||| |||||| |
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| T |
25224814 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25224863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
| Q |
459 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
508 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| |||||| |
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| T |
25288970 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25289019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 652
Target Start/End: Original strand, 25224928 - 25225016
Alignment:
| Q |
564 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
652 |
Q |
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|||||| | |||||| |||| ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| ||||||||||| |
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| T |
25224928 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25225016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 652
Target Start/End: Original strand, 25289084 - 25289172
Alignment:
| Q |
564 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
652 |
Q |
| |
|
|||||| | |||||| |||| ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| ||||||||||| |
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| T |
25289084 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25289172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 652
Target Start/End: Complemental strand, 25728320 - 25728232
Alignment:
| Q |
564 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
652 |
Q |
| |
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|||||| | |||||| |||| ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| ||||||||||| |
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| T |
25728320 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25728232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 508
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
| Q |
459 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
508 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |||||| |
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| T |
25728434 |
gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca |
25728385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 646
Target Start/End: Complemental strand, 25222655 - 25222582
Alignment:
| Q |
573 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc |
646 |
Q |
| |
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|||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| ||||||||||| |
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| T |
25222655 |
tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc |
25222582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 646
Target Start/End: Complemental strand, 25286811 - 25286738
Alignment:
| Q |
573 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc |
646 |
Q |
| |
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|||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| ||||||||||| |
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| T |
25286811 |
tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc |
25286738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 564 - 652
Target Start/End: Original strand, 25618044 - 25618132
Alignment:
| Q |
564 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
652 |
Q |
| |
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|||||| | ||||||||||| |||| |||||||||| ||||||| || | |||||||| || |||||||| ||||||||||||||||| |
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| T |
25618044 |
tccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac |
25618132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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