View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_140 (Length: 209)
Name: NF8888_low_140
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_140 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 51112437 - 51112233
Alignment:
| Q |
1 |
acagagaagaccaaagagtatgcaggcgatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgcaactgatgcag |
100 |
Q |
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| T |
51112437 |
acagagaagaccaaagagtatgcaggcgatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgcaactgatgcag |
51112338 |
T |
|
| Q |
101 |
catacaagtctaaagagtatgctggtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgcagcagagaagaccaa |
200 |
Q |
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| T |
51112337 |
catacaagtctaaagagtatgctggtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgcagcagagaagaccaa |
51112238 |
T |
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| Q |
201 |
agatt |
205 |
Q |
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||||| |
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| T |
51112237 |
agatt |
51112233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 51112203 - 51112112
Alignment:
| Q |
94 |
gatgcagcatacaagtctaaagagtatgctggtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgc |
185 |
Q |
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| T |
51112203 |
gatgcagcatacaagactaaagactatgctggtgatgctgccgagaagaccaaagatgcagcatacaagaccaaagattatgcgggtgatgc |
51112112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 51112134 - 51111995
Alignment:
| Q |
43 |
accaaagactatgctggtggtgctactcagaagagcaaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtgatgctgcacagatgg |
142 |
Q |
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| T |
51112134 |
accaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagagaaga |
51112035 |
T |
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| Q |
143 |
ccaaagatgcagcatacaagaccaaagattatgcaggtga |
182 |
Q |
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| T |
51112034 |
ccaaagatgcagcatataagaccaaagactatgctggtga |
51111995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 51112278 - 51112147
Alignment:
| Q |
73 |
aagagcaaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtgatgctgcacagatggccaaagatgcagcatacaagaccaaagatt |
172 |
Q |
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|||| |||||| |||||| |||||||||| | ||| | ||||| |||| ||||||||||||||| ||| |||||||||||||||||||| ||||| | |
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| T |
51112278 |
aagaccaaagattatgcaggtgatgcagcagagaagaccaaagattatggaagtgatgctgcacagaaggcaaaagatgcagcatacaagactaaagact |
51112179 |
T |
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| Q |
173 |
atgcaggtgatgcagcagagaagaccaaagat |
204 |
Q |
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| T |
51112178 |
atgctggtgatgctgccgagaagaccaaagat |
51112147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 51112017 - 51111890
Alignment:
| Q |
7 |
aagaccaaagagtatgcaggcgatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgcaactgatgcagcataca |
106 |
Q |
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| T |
51112017 |
aagaccaaagactatgctggtgaagctgcacaaaaagccaaagattatgcaggtgatgctgctcacaatactagagagtatgccaatgatgcagcataca |
51111918 |
T |
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| Q |
107 |
agtctaaagagtatgctggtgatgctgc |
134 |
Q |
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| T |
51111917 |
aatctaaagactatgcaggtgatgctgc |
51111890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 51112493 - 51112414
Alignment:
| Q |
11 |
ccaaagagtatgcaggcgatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgca |
90 |
Q |
| |
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| T |
51112493 |
ccaaagagtatgcaggtgatgctgcacaaaaaaccaaagagtatgcaggtgatgctacagagaagaccaaagagtatgca |
51112414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 51112081 - 51112027
Alignment:
| Q |
150 |
tgcagcatacaagaccaaagattatgcaggtgatgcagcagagaagaccaaagat |
204 |
Q |
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| T |
51112081 |
tgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaagat |
51112027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 51112525 - 51112466
Alignment:
| Q |
78 |
caaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtgatgctgcaca |
137 |
Q |
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| T |
51112525 |
caaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcaca |
51112466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 51112461 - 51112421
Alignment:
| Q |
163 |
accaaagattatgcaggtgatgcagcagagaagaccaaaga |
203 |
Q |
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|||||||| |||||||||||||| |||||||||||||||| |
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| T |
51112461 |
accaaagagtatgcaggtgatgctacagagaagaccaaaga |
51112421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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