View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_142 (Length: 206)

Name: NF8888_low_142
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_142
NF8888_low_142
[»] chr3 (11 HSPs)
chr3 (50-187)||(2748688-2748825)
chr3 (64-187)||(2797051-2797174)
chr3 (53-187)||(5412597-5412731)
chr3 (55-187)||(2856126-2856258)
chr3 (56-187)||(2838920-2839048)
chr3 (55-187)||(2768759-2768891)
chr3 (56-187)||(2758904-2759035)
chr3 (53-187)||(2790048-2790191)
chr3 (139-187)||(2755734-2755782)
chr3 (58-187)||(2818247-2818376)
chr3 (50-183)||(2806955-2807097)
[»] scaffold0691 (1 HSPs)
scaffold0691 (64-183)||(6477-6596)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 2748825 - 2748688
Alignment:
Q  50 atatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtatt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  2748825 atatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccgcatctaggaggattggccctatgcattagccgaaggtatt 2748726  T
Q  150 catcaatgacatcttcaatgcgaaatgatgcttctctc 187  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2748725 catcaatgacatcttcaatgcgaaatgatgcttctctc 2748688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 2797174 - 2797051
Alignment:
Q  64 aatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatct 163  Q
    |||||| ||||||||| | ||||||||||||| |||||||||||| ||||  ||||||| || ||||||||| ||| |||||||||||||||||||||||    
T  2797174 aatcaatgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggataggccctatgcatcagctgaaggtattcatcaatgacatct 2797075  T
Q  164 tcaatgcgaaatgatgcttctctc 187  Q
    ||||||||||||||||||||||||    
T  2797074 tcaatgcgaaatgatgcttctctc 2797051  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 5412731 - 5412597
Alignment:
Q  53 tgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcat 152  Q
    |||||| |||||||||||||||||||    ||||||||||||| |||||||||||  |||| | ||||||||  |||||||||||||||| ||||||| |    
T  5412731 tgatgatggggaatcaaagttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattgaccctatgcattagccgatggtattcgt 5412632  T
Q  153 caatgacatcttcaatgcgaaatgatgcttctctc 187  Q
    |||||||||||||||||||||||||||||||||||    
T  5412631 caatgacatcttcaatgcgaaatgatgcttctctc 5412597  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 2856126 - 2856258
Alignment:
Q  55 atgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatca 154  Q
    |||| |||||||||||||||||||| | |||| || ||||  |||||||||||||| || | ||||||||| |||||| || | ||||||||||||||||    
T  2856126 atgatggggaatcaaagttttgattcggcttgtaaccttgttgactaaagatccacgtccatgaggattggccctatgtatcaaccgaaggtattcatca 2856225  T
Q  155 atgacatcttcaatgcgaaatgatgcttctctc 187  Q
    |||||||||||||||||||||||||||||||||    
T  2856226 atgacatcttcaatgcgaaatgatgcttctctc 2856258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 2838920 - 2839048
Alignment:
Q  56 tgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaa 155  Q
    ||||||||||||||||||||||||  ||||| | || |||    ||||||||  |||| ||||||||||| |||||||||||| ||||||||||||||||    
T  2838920 tgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaaggtattcatcaa 2839016  T
Q  156 tgacatcttcaatgcgaaatgatgcttctctc 187  Q
    ||||||||||||||||||||||||||||||||    
T  2839017 tgacatcttcaatgcgaaatgatgcttctctc 2839048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 2768891 - 2768759
Alignment:
Q  55 atgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatca 154  Q
    |||||||||| |||||||||||||| | ||||||||||||  || ||||||||| | ||| ||| |||||| ||||||  | | ||||||||||||||||    
T  2768891 atgacggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattggccctatgggtcaaccgaaggtattcatca 2768792  T
Q  155 atgacatcttcaatgcgaaatgatgcttctctc 187  Q
    |||||||||||||||||||||||||||||||||    
T  2768791 atgacatcttcaatgcgaaatgatgcttctctc 2768759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 2759035 - 2758904
Alignment:
Q  56 tgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaa 155  Q
    |||||||||||||||||||||||| | |||| |||||||  || || |||||| |  | ||||||||||| | |||| || |||||||||||||| ||||    
T  2759035 tgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaa 2758936  T
Q  156 tgacatcttcaatgcgaaatgatgcttctctc 187  Q
    | | ||||||||||||||| ||||||||||||    
T  2758935 ttatatcttcaatgcgaaacgatgcttctctc 2758904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 2790191 - 2790048
Alignment:
Q  53 tgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccac---atctaggaggattggt------cctatgcattagccgaa 143  Q
    |||||| |||||||||||||||||||| | ||||||||||||| || |||||||  ||   ||| || ||||||||       ||||||||| |||||||    
T  2790191 tgatgatggggaatcaaagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaa 2790092  T
Q  144 ggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc 187  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  2790091 ggtattcatcgatgatatcttcaatgcgaaatgatgcttctctc 2790048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 2755782 - 2755734
Alignment:
Q  139 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2755782 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc 2755734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 2818376 - 2818247
Alignment:
Q  58 acggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatg 157  Q
    ||||||| ||||||| || |||   |||| ||||||||  || |||||||  ||||  |||| |||||||||||| || |   |||||||||||||||||    
T  2818376 acggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattggtcctatggatcaaaagaaggtattcatcaatg 2818277  T
Q  158 acatcttcaatgcgaaatgatgcttctctc 187  Q
    ||||||||||||||||||||||| ||||||    
T  2818276 acatcttcaatgcgaaatgatgcatctctc 2818247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 2807097 - 2806955
Alignment:
Q  50 atatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccac---atctaggaggattggt------cctatgcattagcc 140  Q
    ||||||||||||||||||||||||||||   | ||||||||||||  || | |||||||||   ||| ||||||| |||       | ||||||| ||||    
T  2807097 atatgatgacggggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagcc 2806998  T
Q  141 gaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 183  Q
    || |||||||||| |||| ||||||||||||||||||||||||    
T  2806997 gatggtattcatcgatgatatcttcaatgcgaaatgatgcttc 2806955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 6477 - 6596
Alignment:
Q  64 aatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatct 163  Q
    |||||||||||||||| | ||| ||||||||| |||||| ||||| |||| |||||| |||| |||||| || |||||||||||||||||||| ||||||    
T  6477 aatcaaagttttgattaggcttacaatcttgcagactaatgatccgcatccaggagggttggccctatggatcagccgaaggtattcatcaataacatct 6576  T
Q  164 tcaatgcgaaatgatgcttc 183  Q
    ||||||||||||||||||||    
T  6577 tcaatgcgaaatgatgcttc 6596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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