View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_15 (Length: 649)
Name: NF8888_low_15
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 46901306 - 46901506
Alignment:
| Q |
18 |
caacgtgaggaggagaagattaagatgggagatgttctgaccggagcaacagcgaagctgccagctgataaggcggcgacaaggcaagatgctgctgggg |
117 |
Q |
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| T |
46901306 |
caacgtgaggaggagaagattaagatgggagatgttctgaccggagcaacagcgaagctgccagctgataaggcggcgacaaggcaagatgctgctgggg |
46901405 |
T |
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| Q |
118 |
tggctagtgctgagatgaggaataatcctgatgctactgctactcctggtggtgtagctgcttctgttgctgcggctgctaggctcaatgaaaacgtggg |
217 |
Q |
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| T |
46901406 |
tggctagtgctgagatgaggaataatcctgatgctactgctactcctggtggtgtagctgcttctgttgctgcggctgctaggctcaatgaaaacgtggg |
46901505 |
T |
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| Q |
218 |
c |
218 |
Q |
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| T |
46901506 |
c |
46901506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 525 - 606
Target Start/End: Original strand, 46902040 - 46902121
Alignment:
| Q |
525 |
ctcatgtttttagactcatgtattggaaggtgattccaaaaggagaagcaaaccaaattgatcccagccaatcccactccat |
606 |
Q |
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| T |
46902040 |
ctcatgtttttagactcatgtattggaaggtgattccaaaaggagaagcaaaccaaattgatcccagccaatcccactccat |
46902121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 442 - 532
Target Start/End: Original strand, 46901929 - 46902019
Alignment:
| Q |
442 |
aaataaattcatcaagcaaatcttgaacaatcgctcccatgcagatattattgttctgctgctggaactaaacgcaaccatacctcatgtt |
532 |
Q |
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| T |
46901929 |
aaataaattcatcaagcaaatcttgaacaatcgctcccatgcagatattattgttcttgtgctggaactaaatgcaaccatacctcctgtt |
46902019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 46901663 - 46901713
Alignment:
| Q |
378 |
tatgttgtgctcttaattgaaaatggttttcacttgtcaattatatctata |
428 |
Q |
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| T |
46901663 |
tatgttgtgctcttgattgaaaatggttttcacttgtcaattatatctata |
46901713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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