View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8888_low_19 (Length: 587)
Name: NF8888_low_19
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_19 |
 | |
|
| [»] chr4 (10 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 12 - 587
Target Start/End: Complemental strand, 51112971 - 51112396
Alignment:
| Q |
12 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112971 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
51112872 |
T |
|
| Q |
112 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112871 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
51112772 |
T |
|
| Q |
212 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgaaaagaccaaacattatgctgctgacgaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51112771 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgagaagaccaaacattatgctgctgacgaa |
51112672 |
T |
|
| Q |
312 |
agctatgcagatgatgatgatgatgcagaggacaacagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaagg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112671 |
agctatgcagatgatgatgatgatgcagaggacaacagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaagg |
51112572 |
T |
|
| Q |
412 |
ccaaagaatatgctactaatgctgctcagaaggctgcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgc |
511 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112571 |
ccaaagaatatgctactgatgctgctcagaaggctgcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgc |
51112472 |
T |
|
| Q |
512 |
tgcacaaaagaccaaagagtatgcaggtgatgctacagagaagaccaaagaggatgcaggcgatgctgcacagaaa |
587 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51112471 |
tgcacaaaaaaccaaagagtatgcaggtgatgctacagagaagaccaaagagtatgcaggcgatgctgcacagaaa |
51112396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 562
Target Start/End: Complemental strand, 51112460 - 51112388
Alignment:
| Q |
490 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgctacagagaagaccaaaga |
562 |
Q |
| |
|
||||||||||||||||||||||| || | |||||||||||||||||||| |||||| || |||| |||||||| |
|
|
| T |
51112460 |
ccaaagagtatgcaggtgatgctacagagaagaccaaagagtatgcaggcgatgctgcacagaaaaccaaaga |
51112388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 51112427 - 51112348
Alignment:
| Q |
490 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgctacagagaagaccaaagaggatgca |
569 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||| ||||| |||| |||||| |||||| ||||||| ||||| |
|
|
| T |
51112427 |
ccaaagagtatgcaggcgatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgca |
51112348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 529
Target Start/End: Complemental strand, 51112096 - 51112028
Alignment:
| Q |
461 |
agaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaaga |
529 |
Q |
| |
|
||||||||||| || |||||| ||||||| ||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
51112096 |
agaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaaga |
51112028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 519 - 586
Target Start/End: Complemental strand, 51112278 - 51112211
Alignment:
| Q |
519 |
aagaccaaagagtatgcaggtgatgctacagagaagaccaaagaggatgcaggcgatgctgcacagaa |
586 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| ||| | | |||||||||||||| |
|
|
| T |
51112278 |
aagaccaaagattatgcaggtgatgcagcagagaagaccaaagattatggaagtgatgctgcacagaa |
51112211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 545
Target Start/End: Complemental strand, 51112013 - 51111958
Alignment:
| Q |
490 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgct |
545 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
51112013 |
ccaaagactatgctggtgaagctgcacaaaaagccaaagattatgcaggtgatgct |
51111958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 51112360 - 51112301
Alignment:
| Q |
458 |
caaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcaca |
517 |
Q |
| |
|
|||||| ||||| |||| |||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
51112360 |
caaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtgatgctgcaca |
51112301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 51112280 - 51112210
Alignment:
| Q |
484 |
acaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgctacagagaag |
554 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||| | ||||||||||| |||| | |||||||| || ||||| |
|
|
| T |
51112280 |
acaagaccaaagattatgcaggtgatgcagcagagaagaccaaagattatggaagtgatgctgcacagaag |
51112210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 530
Target Start/End: Complemental strand, 51111939 - 51111874
Alignment:
| Q |
465 |
tatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagag |
530 |
Q |
| |
|
||||||| || |||||| |||| || ||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
51111939 |
tatgccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaaccaaagag |
51111874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 51112065 - 51112028
Alignment:
| Q |
525 |
aaagagtatgcaggtgatgctacagagaagaccaaaga |
562 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
51112065 |
aaagactatgcaggtgatgctgcagagaagaccaaaga |
51112028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University