View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_2 (Length: 874)
Name: NF8888_low_2
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 31 - 472
Target Start/End: Complemental strand, 6639848 - 6639404
Alignment:
| Q |
31 |
aacatcaaacttcaatatatattgaagaacataaagaaaataattcaacatgtttgcttttcaagaatgttaaaacttaaa-gataaagaatatgtagta |
129 |
Q |
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| T |
6639848 |
aacatcaaacttcaatatatattgaagaacataaagaaaataattcaacatgtttgcttttcaagaatgttaaaacttaaaagataaagaatatgtagta |
6639749 |
T |
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| Q |
130 |
cnnnnnnngggaatgacggtaagcacggaaattcaattattttgtaagnnnnnnncatatccaaaatagtgaaaattagattttgcgcaaatctacttga |
229 |
Q |
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| T |
6639748 |
caaaaaaagggaatgacggtaagcacggaaattcaattattttgtaagaaaaaaacatatccaaaatagtgaaaattagattttgcgcaaatctacttga |
6639649 |
T |
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| Q |
230 |
tcgaagatggaccaacgagagatgtgtgtctccatttttgcttggtctacgatgttaataattaaggtgagattgtaagaaaattatgatggtggccata |
329 |
Q |
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| T |
6639648 |
tcgaagatggaccaacgagagatgtgtttctccatttttgcttggtctacgatg-taataattaaggtgagattgtaagaaaattatgatggtggccata |
6639550 |
T |
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| Q |
330 |
actcattaaatatttagtgctatgttaccttgatatgaa-tggaaagatgataggaatattaacctgatttggttcgagtctaagaggaagttgatggag |
428 |
Q |
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| T |
6639549 |
actcattaaatatttagtgctatgttaccttgatatgaattggaaagatgataggaatattaacctgatttggtttgagtctaagaggaagttgatggag |
6639450 |
T |
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| Q |
429 |
gaaaaataggagatt--gagaggttagatgaagggagagcgacgca |
472 |
Q |
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| T |
6639449 |
gaaaaataggagattgagagaggttagatgaagggagagcgacgca |
6639404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 477 - 859
Target Start/End: Complemental strand, 6639365 - 6638984
Alignment:
| Q |
477 |
gtataactccatctctgtaaaacaacgtcgcacaatattattacgtataccctaggtctatacatagaaaaatggcatcccaataaattgtggttcaaga |
576 |
Q |
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| T |
6639365 |
gtataactccatctctgtaaaacaacgtcgcacaatattattacgtataccttaggtctatacatagcaaaatggcatcccaataaattgtggttcaaga |
6639266 |
T |
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| Q |
577 |
ggaggcccatccgaactcacccaccgttagatgagttaaacgatgccagtcaatcgaaatcgaaagattgggcgggtcgcggctgaggttgaaaccctat |
676 |
Q |
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| T |
6639265 |
ggaggcccatccaaactcacccaccgttaaatgagttaaatgatgccagtcaatcgaaacccaaagattgggcgg-tcgcggctgaggctgaaaccctat |
6639167 |
T |
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| Q |
677 |
ccaccccttcccattaatatattgttgatgttgattgttgatacgaagctctacaacttctcaaaggtttagattgctacctagtggtgcaccttatcaa |
776 |
Q |
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| T |
6639166 |
ccaccccttcccattaatatattgttgatgttgattgttgatacgaagctctacaacttctcaaaggtttagattgccacctagtggtgcaccttatcaa |
6639067 |
T |
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| Q |
777 |
ctgaaacatacacaaatgtaatgacttcttagcctctttgggtcataaggtcttgtttagtttctgctcttatgagtattatt |
859 |
Q |
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| T |
6639066 |
ctgaaacatacacaaatgtattgacttcttagcctctttgggtcataagatcttgtttggtttctgctcttatgagtattatt |
6638984 |
T |
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