View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_21 (Length: 575)
Name: NF8888_low_21
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 11 - 560
Target Start/End: Complemental strand, 1445262 - 1444713
Alignment:
| Q |
11 |
cagagaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccaccgtaac |
110 |
Q |
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| T |
1445262 |
cagacaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccaccgtaac |
1445163 |
T |
|
| Q |
111 |
cttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacactgttg |
210 |
Q |
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| T |
1445162 |
cttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacactgttg |
1445063 |
T |
|
| Q |
211 |
agagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccacacttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445062 |
agagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccacacttg |
1444963 |
T |
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| Q |
311 |
ttgttaaactcttgtgtgttagaatcactcctttaggtaatcctgttgttcctgaagaaaatggtagcgccaccgcgtcttctggatcgatctccactac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1444962 |
ttgttaaactcttgtgtgttagaatcactcctttaggtaatcctgttgttcctgaagaaaatggtagcgccaccgcgtcttctggatcgatctccactac |
1444863 |
T |
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| Q |
411 |
cggaatatcctcttcgttcgactcagaaatcatcgaaaaatgtaaacaattcagcggtggttcgtcggttgttatcaccttaaagtcaaattctgcacca |
510 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1444862 |
cggaatatcctcttcgttcgactcagaaatcaccgaaaaatgtaaacaattcagcggtggttcgtcggttgttatcaccttaaagtcaaattctgcacca |
1444763 |
T |
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| Q |
511 |
acctgatccttttgacggagtttatcaacgtacattgcttgtgtaataat |
560 |
Q |
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| T |
1444762 |
acctgatccttttgacggagtttatcaacgtacattgcttgtgtaataat |
1444713 |
T |
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