View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_22 (Length: 514)
Name: NF8888_low_22
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 37975712 - 37975214
Alignment:
| Q |
1 |
aaatgagcaaacaaatcatgtgaaatgaccacagatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaat |
100 |
Q |
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| T |
37975712 |
aaatgagcaaacaaatcatgtgaaatgaccacagatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaat |
37975613 |
T |
|
| Q |
101 |
ctataatgtaatgatcgagatgatatggtttatagcttagattagattctgtgatttattaggcacattacaaagttgacnnnnnnnnnnnnnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975612 |
ctataatgtaatgatcgagatggtatggtttatggcttagattagattctgtgatttattaggcacattacaaagttgacaaaagaaaagaaaaaagaag |
37975513 |
T |
|
| Q |
201 |
nntagggactggtggaataattggtgcttaagttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatg |
300 |
Q |
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| T |
37975512 |
aatagggactggtggaataattggtgcttaagttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatg |
37975413 |
T |
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| Q |
301 |
ttactatgtttttgttagttagtgaaaatgaaacataacattgtgtttagggaatctatattggttgaataaagagttggaatccactcaaaattaagca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37975412 |
ttactatgtttttgttagttagtgaaaatgaaacataacattgtgtttagggaatctatattggttgaataaagagttggaatccactcaaaattaagta |
37975313 |
T |
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| Q |
401 |
gtagatgtttgatgggaagaataataacatagatatttggaatagagacattaacatgactccatccaacctttgacaacccctctcatatgttaattt |
499 |
Q |
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| T |
37975312 |
gtagatgtttgatgggaagaataataacatagatatttggaatagagacattaacatgactccatccaacctttgacaacccctctcatatgttaattt |
37975214 |
T |
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