View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_24 (Length: 506)
Name: NF8888_low_24
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 15056902 - 15056413
Alignment:
| Q |
1 |
tcatcaatcaattttgtgagaaaaggtgatccgacgtaacctcattcggactaaattttatcgtacgtggagtctctgtcaattttaatttggcagtnnn |
100 |
Q |
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||||||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15056902 |
tcatcaatcaattttacgagaaaaggtgattcgacttaacctcattcgaactaaattttatcgtacgtggagtctctgtcaatttcaatttggcagtaaa |
15056803 |
T |
|
| Q |
101 |
nnnntaatattaatatggtcatgcatttcatatcttgatgtagaggcacattacatcaatttgctttataggagtgacaaatcttgtcaaaattactcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15056802 |
aaaaaaatattaatatggtcatgcatttcatatcttgatgtagaggcacattacatcaatttgctttataggagtgacaaatcttgtcaaaattactcat |
15056703 |
T |
|
| Q |
201 |
atttctttggataattaatatcatatttaattgttctttataatcatattacaaaatgatgtttgataatgtttgggtcaatccatcgtggcctcacaac |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15056702 |
atttctttagataattaatatcatatttaattgttctttataatcatattataaaatgatgtttgataatgtttgggtcaatccatcgtggcctcacaac |
15056603 |
T |
|
| Q |
301 |
ccacgtttaccctgtataaatacctccttcca--gtatatacaagacaagttacgcaatctatatactctctaaaacctttcactctttgatcaaccagt |
398 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
15056602 |
ccacgtttaccctgtataaatacctccttccactatatatataagacaagttacgcaatctatatactctctaaaaccttttactctttgatcatccagt |
15056503 |
T |
|
| Q |
399 |
aatttgagcattagagtatttgcatataccaccttcattctcgatagcaatatgatggtgctccaacttggccaacctcttcggtctatc |
488 |
Q |
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|| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15056502 |
aacctgagcattagagtgcttgcagataccaccttcattctcgatagcaatatgatggtgctccaacttggccaacctcttcggtctatc |
15056413 |
T |
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