View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_28 (Length: 488)

Name: NF8888_low_28
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_28
NF8888_low_28
[»] chr7 (11 HSPs)
chr7 (16-473)||(38312938-38313395)
chr7 (193-426)||(38271548-38271782)
chr7 (193-426)||(38280223-38280456)
chr7 (284-426)||(38275391-38275533)
chr7 (27-142)||(38280075-38280191)
chr7 (286-427)||(38303254-38303395)
chr7 (22-137)||(38271395-38271510)
chr7 (22-138)||(38275146-38275262)
chr7 (30-138)||(38290219-38290327)
chr7 (26-65)||(45584727-45584766)
chr7 (130-170)||(38308982-38309022)
[»] chr1 (2 HSPs)
chr1 (301-419)||(31700990-31701108)
chr1 (25-148)||(31701225-31701348)
[»] chr8 (1 HSPs)
chr8 (358-410)||(16238514-16238565)


Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Original strand, 38312938 - 38313395
Alignment:
Q  16 cagatatactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38312938 cagatatactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatat 38313037  T
Q  116 gtgacaactttcccaatggaaacagaatctgcaagaaaaggatcacactgttaaaatatacaaacagaacacaaaagttagatatcaaa-tcactattac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38313038 gtgacaactttcccaatggaaacagaatctgcaagaaaaggatcacactgttaaaatatacaaacagaacacaaaagttagatatcaaaatcactattac 38313137  T
Q  215 aagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaaccaacaaagctgcaaacaagaatggg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313138 aagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaaccaacaaagctgcaaacaagaatggg 38313237  T
Q  315 cccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagtcaatatgacagcttctagaatta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313238 cccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagtcaatatgacagcttctagaatta 38313337  T
Q  415 ctttccctgcattcagtttcaaagatcatcagaaaacatagcaattattatattgaaaa 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38313338 ctttccctgcattcagtttcaaagatcatcagaaaacatagcaattatta-attgaaaa 38313395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 193 - 426
Target Start/End: Original strand, 38271548 - 38271782
Alignment:
Q  193 ttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaacca 291  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||    |||| ||| ||||||| |||| |||| |  |||||||  | ||||||||    
T  38271548 ttagatatcaaaatcactattataagggctaatttgccaattaattacactctaaatagagagcaaaataccagaatcagagcaaagagaataagaacca 38271647  T
Q  292 acaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagt 391  Q
    |||||||| | ||||||||| || | ||| |||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  || ||||    
T  38271648 acaaagctcccaacaagaatcggtctaaagagccgaaatcatgacctctttttgcggcccaatatgtgtaaagagtcaagctgaacacaactgcaatagt 38271747  T
Q  392 caatatgacagcttctagaattactttccctgcat 426  Q
      |||| |||| | |||||||| ||||||||||||    
T  38271748 tgatataacagatactagaattgctttccctgcat 38271782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 193 - 426
Target Start/End: Original strand, 38280223 - 38280456
Alignment:
Q  193 ttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaacca 291  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||    |||| ||| |||||||| |||||||| |   ||||||  | ||||| ||    
T  38280223 ttagatatcaaaatcactattataagggctaatttgccaattaattacactctaaatagagagcaaat-acctgaatcagaccaaagagcacaagaatca 38280321  T
Q  292 acaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagt 391  Q
    |||| | | |  ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  38280322 acaatgatccgtacaagaatgggcctaaaaagctgaaatcatgacctcttcttgcggcccaaaatgtgtaaagagtcaagctgaacacaactgcagtagt 38280421  T
Q  392 caatatgacagcttctagaattactttccctgcat 426  Q
      |||| |||| | ||||||| |||||||||||||    
T  38280422 tgatataacagatactagaatgactttccctgcat 38280456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 284 - 426
Target Start/End: Original strand, 38275391 - 38275533
Alignment:
Q  284 aagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaacc 383  Q
    |||||||||||||||  | ||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||     
T  38275391 aagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctctttgcggcccaaaatgtgtaaagagtcaagctgaacgcaact 38275490  T
Q  384 acagtagtcaatatgacagcttctagaattactttccctgcat 426  Q
     |||||||  |||| |||| | |||||||  ||||||||||||    
T  38275491 gcagtagttgatataacagatactagaatggctttccctgcat 38275533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 38280075 - 38280191
Alignment:
Q  27 atcataggagtacctcttgataaggttgtctgtgtcatagaca--atgtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaact 124  Q
    |||||| ||| |||||| ||||||||||| |||||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  38280075 atcatatgagaacctctcgataaggttgtatgtgtcatagacacaatgtagccagaaaatataatagctccaagacacccatagat-atatgtgacaact 38280173  T
Q  125 ttcccaatggaaacagaa 142  Q
    |  |||||||||||||||    
T  38280174 tatccaatggaaacagaa 38280191  T

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Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 286 - 427
Target Start/End: Original strand, 38303254 - 38303395
Alignment:
Q  286 gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac 385  Q
    |||| ||||||||| ||| |||||||||  | |||||||| ||||||| || ||||||||| |||||| | |||||||||||||| || |||||||||||    
T  38303254 gaactaacaaagctccaatcaagaatggagctaaaaagctgaaatcataacatctttttgcagcccaagacgtgtagagagtcaaactcaacacaaccac 38303353  T
Q  386 agtagtcaatatgacagcttctagaattactttccctgcatt 427  Q
    | |||| |||||||||||||||| ||||||||| ||| ||||    
T  38303354 attagttaatatgacagcttctaaaattacttttcctacatt 38303395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 38271395 - 38271510
Alignment:
Q  22 tactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatatgtgaca 121  Q
    ||||||||||  ||| |||||||| |||||||||| ||||||  || |||||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  38271395 tactcatcatttgagaacctcttgttaaggttgtccgtgtcaatgaaaatgtagccataaaatataatagctccaagacacccatagatcaaatgtgaca 38271494  T
Q  122 actttcccaatggaaa 137  Q
    ||||  ||||||||||    
T  38271495 acttatccaatggaaa 38271510  T

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Target: chr7; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 38275146 - 38275262
Alignment:
Q  22 tactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatatgtgaca 121  Q
    ||||||||||  ||| || ||||| |||||||||||||||||  || ||||| |||| |||||||||||||| |||||||||||||||||| ||||||||    
T  38275146 tactcatcatttgagaacttcttgttaaggttgtctgtgtcaacgaaaatgtggccataaaatataatagctacaagacacccatagatcacatgtgaca 38275245  T
Q  122 actttcccaatggaaac 138  Q
    ||||  |||||||||||    
T  38275246 acttatccaatggaaac 38275262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 38290219 - 38290327
Alignment:
Q  30 ataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttccc 129  Q
    ||||||| ||||||||||| |||||| ||| | ||| || ||  | ||| |||||||||||| || ||  ||||||| ||||||||||||||| || ||     
T  38290219 ataggagaacctcttgatatggttgtatgtatgatacacgatacaaccacaaaatataatagatgtaaagcacccatggatcatatgtgacaatttacct 38290318  T
Q  130 aatggaaac 138  Q
    |||||||||    
T  38290319 aatggaaac 38290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 45584766 - 45584727
Alignment:
Q  26 catcataggagtacctcttgataaggttgtctgtgtcata 65  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  45584766 catcataggagaacctcttgataaggttgtttgtgtcata 45584727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 38308982 - 38309022
Alignment:
Q  130 aatggaaacagaatctgcaagaaaaggatcacactgttaaa 170  Q
    |||||||||| ||||||||| |||| |||||||||||||||    
T  38308982 aatggaaacaaaatctgcaacaaaatgatcacactgttaaa 38309022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 31701108 - 31700990
Alignment:
Q  301 caaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtca-agctgaacacaaccacagtagtcaatatga 399  Q
    |||||||||| ||||| |  ||| | |||||||  |||||  |||| |||||||||||||||||||||| |||| | ||| ||||||| ||||||||| |    
T  31701108 caaacaagaaggggccaaggaagttgaaatcatagcctctacttgcagcccaaaatgtgtagagagtcagagct-atcaccaccacagcagtcaatataa 31701010  T
Q  400 cagcttctagaattactttc 419  Q
    ||||||| ||||||||||||    
T  31701009 cagcttccagaattactttc 31700990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 31701348 - 31701225
Alignment:
Q  25 tcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatatgt-gacaac 123  Q
    |||||||| ||||| |||||||| | ||||||||| ||||| |  ||||||||| |||||||||| ||||| |  || ||||||||||| ||| || |||    
T  31701348 tcatcataagagtatctcttgatcaagttgtctgtatcatataggatgtagccacaaaatataattgctgccaagcaaccatagatcat-tgtagataac 31701250  T
Q  124 tttcccaatggaaacagaatctgca 148  Q
    || ||||||||||| | ||||||||    
T  31701249 ttgcccaatggaaagaaaatctgca 31701225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 16238514 - 16238565
Alignment:
Q  358 tgtagagagtcaagctgaacacaaccacagtagtcaatatgacagcttctaga 410  Q
    |||||||| |||||||||||||||||| | |||||||||| | ||||||||||    
T  16238514 tgtagagaatcaagctgaacacaacca-aatagtcaatataatagcttctaga 16238565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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