View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_30 (Length: 484)
Name: NF8888_low_30
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 260 - 468
Target Start/End: Complemental strand, 50667998 - 50667790
Alignment:
| Q |
260 |
cttctcattttacgaaaaccattataatagttaaaagaagagttacttactgaatctcgaacaacaagagaaggagtagcatcatggttacaaagatcta |
359 |
Q |
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| T |
50667998 |
cttctcattttacgaaaaccattataatagttaaaagaagagttacttactgaatctcgaacaacaagagaaggagtagcatcatggttacaaagatcta |
50667899 |
T |
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| Q |
360 |
aacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaaacttgtatgccttataactcc |
459 |
Q |
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| T |
50667898 |
aacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaaacttgtatgccttataactcc |
50667799 |
T |
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| Q |
460 |
tccaaattc |
468 |
Q |
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||||||||| |
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| T |
50667798 |
tccaaattc |
50667790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 50668255 - 50668095
Alignment:
| Q |
8 |
attattctggtggaaaaaactaagaaacctaaaaagttggaaatggagattaattaaattagcttgtgtatgtatgcattgaaatttgtcaaaagtacaa |
107 |
Q |
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| T |
50668255 |
attattctggtggaaaaaaataagaaacctaaaaaattggaaatggagattaattaaattagcttgtgtatgtatgcattgaaatttgtcaaaagtgcaa |
50668156 |
T |
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| Q |
108 |
aaaaccaattaaaagggaagtagagatcaaaaagtgagtgtctcttatgatagttaaattg |
168 |
Q |
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| T |
50668155 |
aaaaccaattaaaagggaagtagaaatcaaaaagtgagtgtctcttatgatagttaaattg |
50668095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 303 - 450
Target Start/End: Original strand, 888367 - 888514
Alignment:
| Q |
303 |
tacttactgaatctcgaacaacaagagaaggagtagcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaac |
402 |
Q |
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||||||| ||||||| ||| |||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
888367 |
tacttacagaatctctaaccacaatagaaggagcagcatcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaaccaaaac |
888466 |
T |
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| Q |
403 |
tttcttccctctaaactcttcaccacttttatacaaacttgtatgcct |
450 |
Q |
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| T |
888467 |
tttcttccctctaaactcttcaccacttttatacaaactagtatgcct |
888514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 317 - 417
Target Start/End: Original strand, 29857445 - 29857545
Alignment:
| Q |
317 |
cgaacaacaagagaaggagtagcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaa |
416 |
Q |
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|||| ||||| |||||| | |||| ||| || |||||||| | | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29857445 |
cgaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaa |
29857544 |
T |
|
| Q |
417 |
a |
417 |
Q |
| |
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|
| T |
29857545 |
a |
29857545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 17408189 - 17408131
Alignment:
| Q |
338 |
gcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaac |
396 |
Q |
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|||| ||||||||||||||| | | |||||||||| |||||||| ||||| |||||||| |
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| T |
17408189 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
17408131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 408
Target Start/End: Complemental strand, 32790135 - 32790064
Alignment:
| Q |
337 |
agcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttctt |
408 |
Q |
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| T |
32790135 |
agcattatggttgcaaaggtctaaacaaacctccatacctgaatttccacaccccaccaccaaaacattctt |
32790064 |
T |
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