View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_31 (Length: 471)

Name: NF8888_low_31
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_31
NF8888_low_31
[»] chr7 (1 HSPs)
chr7 (18-466)||(48493015-48493463)
[»] chr8 (1 HSPs)
chr8 (145-226)||(29136883-29136964)
[»] chr6 (1 HSPs)
chr6 (78-159)||(5728334-5728414)
[»] chr4 (3 HSPs)
chr4 (78-127)||(8466995-8467044)
chr4 (124-184)||(40309784-40309844)
chr4 (124-184)||(40329325-40329385)
[»] chr2 (2 HSPs)
chr2 (145-226)||(33577151-33577232)
chr2 (80-136)||(43727893-43727949)


Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 48493463 - 48493015
Alignment:
Q  18 taatcacacaagtgtgttatttgcactactaaaattaaactacttttgcgacaacaatctaaactcattaaccattaatgtaacttcactgaccacaaat 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48493463 taatcacacaagtgtgttatttgcaccactaaaattaaactacttttgcgacaacaatctaaactcattaaccattaatgtaacttcactgaccacaaat 48493364  T
Q  118 tttgacgtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacatttgaattcgtgattaatgaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48493363 tttgacgtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacattcgaattcgtgattaatgaagt 48493264  T
Q  218 tatattggtggttgagtttcaattgttggtatatccattaactctaccgcattaaacacttagaatgtttttgcaagaattgtttaaatttggttgtttg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48493263 tatattggtggttgagtttcaattgttggtatatccattaactctaccgcattaaacacttagaatgtttttgcaagaattgtttaaatttggttgtttg 48493164  T
Q  318 aaactcatttatgcacaacttaaactgacttgaaaaccatgtgtgttcagatattggcattcttcttgagaccaaatagggattccaagtttcgcaaaat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48493163 aaactcatttatgcacaacttaaactgacttgaaaaccatgtgtgttcagatattggcattcttcttgagaccaaatagggattccaagtttcgcaaaat 48493064  T
Q  418 gtggaatttgtaccacagttggtttggaaggatggcactattctttgca 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48493063 gtggaatttgtaccacagttggtttggaaggatggcactattctttgca 48493015  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 29136883 - 29136964
Alignment:
Q  145 gtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacatttgaattcgtgattaatgaagttatattggt 226  Q
    ||||||||||||||||| | ||| |||  ||||||||||| ||||| ||||   |||||||| |||||||||||| ||||||    
T  29136883 gtgttcaaatctacatgtagttgaacatctgaaaattatggttaaccacatccaaattcgtgtttaatgaagttacattggt 29136964  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 5728334 - 5728414
Alignment:
Q  78 aaactcattaaccattaatgtaacttcactgaccacaaattttgacgtgatttaccacaactttcgcgtgttcaaatctaca 159  Q
    |||||||||||||||||| ||||||||| || ||| |||||| || |||||| | || |||||||  |||||||||||||||    
T  5728334 aaactcattaaccattaacgtaacttcattg-ccataaatttggatgtgattaatcataactttcaggtgttcaaatctaca 5728414  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 8467044 - 8466995
Alignment:
Q  78 aaactcattaaccattaatgtaacttcactgaccacaaattttgacgtga 127  Q
    ||||||||||||||| |||||||||||| | ||||  |||||||||||||    
T  8467044 aaactcattaaccatcaatgtaacttcattaaccaagaattttgacgtga 8466995  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 40309844 - 40309784
Alignment:
Q  124 gtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatg 184  Q
    |||||| ||||||||||||  ||||||||| ||||||||| ||  | ||||||||||||||    
T  40309844 gtgattaaccacaactttcaagtgttcaaacctacatgcagttaaatacttgaaaattatg 40309784  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 40329385 - 40329325
Alignment:
Q  124 gtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatg 184  Q
    |||||| ||||||||||||  ||||||||| ||||||||| ||  | ||||||||||||||    
T  40329385 gtgattaaccacaactttcaagtgttcaaacctacatgcagttaaatacttgaaaattatg 40329325  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 33577232 - 33577151
Alignment:
Q  145 gtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacatttgaattcgtgattaatgaagttatattggt 226  Q
    ||||||||||||||||| | ||| |||  ||||||| ||| ||||| |||||  |||| ||| |||||||||||| ||||||    
T  33577232 gtgttcaaatctacatggagttgaacatctgaaaataatggttaaccacattcaaatttgtggttaatgaagttacattggt 33577151  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 43727893 - 43727949
Alignment:
Q  80 actcattaaccattaatgtaacttcactgaccacaaattttgacgtgatttaccaca 136  Q
    |||||||||||||||| ||||||||| | | ||||||||| | | ||||||||||||    
T  43727893 actcattaaccattaaagtaacttcattaatcacaaatttgggcatgatttaccaca 43727949  T

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