View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_33 (Length: 470)
Name: NF8888_low_33
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 4670355 - 4670064
Alignment:
| Q |
11 |
gtgttgattaacatgtttaaggcccattttgttcgtgtttagagcaatgctagccacaggggagaggtagcttagcagccttttatttgatctaaatgag |
110 |
Q |
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| T |
4670355 |
gtgttgattaacatgtttaaggcccattttgttcgtgttcagagcaatgctagccacaggggagaagtagcttagcagccttttatttgatctaaatgag |
4670256 |
T |
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| Q |
111 |
acttgtgtcttcctccttcctatacatagatgatagagtcgtactaacgatgcgtctacgacaaagatcgacaaaactgtagtgttgataagaactatga |
210 |
Q |
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| T |
4670255 |
acttgtgtcttcctccttcctatgcatagatgatagagtcgtactaacgatgcgtctacgacaaagatcgacaaaactgtagtgttgataagaattatga |
4670156 |
T |
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| Q |
211 |
acctaaaccttgtt-ttttgtgacaaaagtgttttgtggactatggtctcaatggtcggcaagttgatcttcaaaccttgaatgttgcttgtgaaggttt |
309 |
Q |
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| T |
4670155 |
acctaaaccttgtttttttgtgacaaaagtgttttgtggact---------atggtcggcaagttgatcttcaaaccttgaatgtggcttgtgaaggttt |
4670065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 55 - 368
Target Start/End: Complemental strand, 4671010 - 4670688
Alignment:
| Q |
55 |
caatgctagccacaggggagaggtagcttagcagccttttatttgatctaaatgagacttgtgtcttcctccttcctatacatagatgatagagtcgtac |
154 |
Q |
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| T |
4671010 |
caatgctagccacagggaagaggtagcttagctgccttttatttgatctaaatgagacttgtgtcttcctccatcctatgcatagatgatagagtggtac |
4670911 |
T |
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| Q |
155 |
taacgatgcgtctacgacaaagatcgacaaaactgtagtgttgataagaactatgaacctaaaccttgtt-ttttgtgacaaaagtgttttgtggactat |
253 |
Q |
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| T |
4670910 |
taacaacgcgtctacgacaaagatcgacaaaactgtggtgtggataagagttatgaacctaaaccttgtttttttatgacaaaagtgttttttggacttc |
4670811 |
T |
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| Q |
254 |
ggtctcaatggtcggc----------aagttgatcttcaaaccttgaatgttgcttgtgaaggtttgcgcgtatgtgcatggaagcttaccttgcaaaga |
343 |
Q |
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||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| || ||| |
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| T |
4670810 |
agtctcaaaggtcgacaaccattttaaagttgatcttcaaaccttgaaggttgcttgtgaaggtttgcacatatgtgcatggaagcttacct--cacaga |
4670713 |
T |
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| Q |
344 |
cgattgttggtcgtgtagggataaa |
368 |
Q |
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| T |
4670712 |
cgattgttggtcgtgtagggttaaa |
4670688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 347 - 454
Target Start/End: Complemental strand, 4670066 - 4669959
Alignment:
| Q |
347 |
ttgttggtcgtgtagggataaagggacagtggtaccaagtgcaatacatggtgggtctacacataatttgtatgcattggggatgctacaaccatgtgat |
446 |
Q |
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| T |
4670066 |
ttgttggtcgtgtagggataaagggacagtggtaccaagtgcaatacatggtgggtctacatataatttgtatgcattggggatgctacaaccatgtgat |
4669967 |
T |
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| Q |
447 |
gaaagaat |
454 |
Q |
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|||||||| |
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| T |
4669966 |
gaaagaat |
4669959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 10873093 - 10873001
Alignment:
| Q |
339 |
aaagacgattgttggtcgtgtagggataaagggacagtggtaccaagtgcaatacatggtgggtctacacataatttgtatgcattggggatgcta |
434 |
Q |
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|||||| ||||||||| |||| |||||||| ||| ||| |||||||||||||||| | |||||||||||||||||||||| |||| |||||||| |
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| T |
10873093 |
aaagactattgttggttgtgtggggataaatggagagtagtaccaagtgcaatac---gagggtctacacataatttgtatgtattgtggatgcta |
10873001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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