View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_34 (Length: 460)
Name: NF8888_low_34
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 3 - 445
Target Start/End: Complemental strand, 39178604 - 39178161
Alignment:
| Q |
3 |
cgcatatacctttttaccataaatataattcacaaagactcaccttcaaactctccctaacccttaaaaatgtttatatcagacaaccctttaacttggg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39178604 |
cgcatatacctttttaccataaatataattcacaaagactcaccttcaaactctccctaacccttaaaaatgtttatatcagacaaccctttaacttggg |
39178505 |
T |
|
| Q |
103 |
atataaatcagtttggttatagttttcttaacaacatgaattatgatccacgctaacaacttatgggatgataaaccacaacaagtcaacaacagactta |
202 |
Q |
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| T |
39178504 |
atataaatcagtttggttatagttttcttaacaacatgaattatgatccacgctaacaacttatgggatgataaaccacaacaagtcaacaacagactta |
39178405 |
T |
|
| Q |
203 |
ataatacatcttgacccagaaattcaagtatctgatgcatgtttacattctcctatgctgtattgaatttactcattctgatcattgtcggatattatct |
302 |
Q |
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| T |
39178404 |
ataatacatcttgacccagaaattcaagtatctgatgcatgtttacattctcctatgttgtattgaatttactcattctgatcattgtcggatattatct |
39178305 |
T |
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| Q |
303 |
tttgcacttggatttcaagcacattttttgttttctaaatatcattaatcaacacacgacccatggttttctacaattcaagtattacactt-nnnnnnn |
401 |
Q |
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| T |
39178304 |
tttgcacttggatttcaagcacattttttgttttctaaatatcattagtcaacacacgacccatggttttctacaattcaagtattacacttaaaaaaaa |
39178205 |
T |
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| Q |
402 |
ttggatttagtatgctacctatctttcgtgattatacagtataa |
445 |
Q |
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| T |
39178204 |
ttggatttagtatgctacctatctttcgtgattatacagtataa |
39178161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 60 - 445
Target Start/End: Complemental strand, 39181734 - 39181350
Alignment:
| Q |
60 |
taacccttaaaaatgtttatatcagacaaccctttaacttgggatataaatcagtttggttatagttttcttaacaacatgaattatgatccacgctaac |
159 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
39181734 |
taacctttaaaaatgtttatatcagacaaccctttagcttgggatataaatcagtttggtta--gtttgcttaacaacatgaattatgatccacgctaac |
39181637 |
T |
|
| Q |
160 |
aacttatgggatgataaaccacaacaagtcaacaacagacttaataatacatcttgacccagaaattcaagtatctgatgcatgtttacattctcctatg |
259 |
Q |
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|||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |
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| T |
39181636 |
aacttatggggtgctaaaccacaacaactcaacaacaaacttaataatacatcttgacccagaaattcaagtatctgatgcatgtttaccttctcttgtg |
39181537 |
T |
|
| Q |
260 |
ctgtattgaatttactcattctgatcattgtcggatattatcttttgcacttggatttcaagcacattttttgttttctaaatatcattaatcaacacac |
359 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
39181536 |
ctttattgaatttactcattctgatcattgtcagatattatcttttgcacgtggatttcaagcacattttttgttttctacatattattaatcaacacac |
39181437 |
T |
|
| Q |
360 |
gacccatggttttctacaattcaagtattacacttnnnnnnntt-ggatttagtatgctacctatctttcgtgattatacagtataa |
445 |
Q |
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||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||| |||||||||| ||||||| |
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| T |
39181436 |
gacccatggttttctacaattcaagtattacgcttaaaaaaattgggatttagaatgctacctatcttacgtgattataaagtataa |
39181350 |
T |
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