View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_36 (Length: 444)
Name: NF8888_low_36
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 32113803 - 32114232
Alignment:
| Q |
1 |
tggtacttttgattatgtaggttttaatttattaaactataaggatcctaacagtgccacaagtttgtatgggagaatgtatatgccacttctttcaaca |
100 |
Q |
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| T |
32113803 |
tggtacttttgattatgtaggttttgatttattaaactataaggatcctaacagtgccacaagtttgtatgggagaatgtatatgccacttctttcaaca |
32113902 |
T |
|
| Q |
101 |
ctaatgactatggccttcattgtcacctttggtgtgtgacagtcttctaagccttctgcaaatggattatggagacaaaggatgagatggcagaaatgtt |
200 |
Q |
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| T |
32113903 |
ctaatgactatggccttcattgtcacctttggtgtgtgacagtcttctaagccttctgcaaatggattatggagacaaaggatgagatggcagaaatgtt |
32114002 |
T |
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| Q |
201 |
ataatta-ttttttgcatggccatgtatttagttagatgtccttgttgattgcataaatnnnnnnntgtatgtttatgatgattccatatgtattcacgc |
299 |
Q |
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| T |
32114003 |
ttaattatttttttgcatggccatgtatttagttagatgtccttgttgattgcataaataaataaatgtatgtttatgatgattccatatgtattcacgc |
32114102 |
T |
|
| Q |
300 |
aaataaataagcagcagtgctgtggtaatttgtttttactattctgctcaacgttttg-nnnnnnnnnnnnnnnntggtattaaccctcctatttccgga |
398 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
32114103 |
aaataaataagcagcaatgctgtggtaatttgtttttactattctgctcaacgttttgaaaaaagaaaaaaaaaatggtattaaccctcctatttccaga |
32114202 |
T |
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| Q |
399 |
gatttgaactctaattctctcaaacgatac |
428 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32114203 |
gatttgaactctaattctctcaaacgatac |
32114232 |
T |
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