View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_42 (Length: 426)
Name: NF8888_low_42
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Complemental strand, 36397368 - 36396991
Alignment:
| Q |
9 |
ggacatcaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaattataaacactaaacagacaatctggattg |
108 |
Q |
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| T |
36397368 |
ggacatgaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaattataaacactaaacagacaatttggattg |
36397269 |
T |
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| Q |
109 |
tgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttctgatattttcttcggctccacacatgc |
208 |
Q |
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| T |
36397268 |
tgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttctgatattttcttcggctc--cacatgc |
36397171 |
T |
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| Q |
209 |
catgccaatgtcaaaaacaatcaagttc-ttttatcactacatatgaacaaacacaaacaaaatccattataattacatgattgcatatgtataacaaag |
307 |
Q |
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| T |
36397170 |
catgccaatgtcaaaaacaatcaagttctttttatcactgcatatgaacaaacacaaacgaaatccattataattacatgattgcatatgtataacaaag |
36397071 |
T |
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| Q |
308 |
cataacaaattaaccaatgctgtatcatcgtgcctttctcccacagggaaaaaatatacatgaacttaggtcctcaagac |
387 |
Q |
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| T |
36397070 |
cataacaaattaactaatgctgtatcatcgtgcctttctcccacagggaaaaaatatacatgaacttaggtcctcaagac |
36396991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 8455143 - 8455256
Alignment:
| Q |
268 |
aaatccattataattacatgattgcatatgtataacaaagcataacaaattaaccaatgctgtatcatcgtgcctttctcccacagggaaaaaatataca |
367 |
Q |
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| T |
8455143 |
aaatccattataattacatgattgcatatgtataacaaagcaaaacaaattaactaatgctgtatcatcgtgcctttcttccacagggaaaaaatataca |
8455242 |
T |
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| Q |
368 |
tgaacttaggtcct |
381 |
Q |
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|||||||||||||| |
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| T |
8455243 |
tgaacttaggtcct |
8455256 |
T |
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