View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8888_low_43 (Length: 421)
Name: NF8888_low_43
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_43 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 6385373 - 6384988
Alignment:
| Q |
19 |
attgcttagtttcctgaatagatcgttgttatgtttcatgtggttagtacacccattgtcaatcaatcaattctcacttgattcgatgttagagaaacat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6385373 |
attgcttagtttcctgaatagatcgttgttatgtttcatgtggttagtacacccattgtcaatcaatcaattctcacttgattcgatgttagagaaacat |
6385274 |
T |
|
| Q |
119 |
gtcgcaatgaacaagtcacccgtctcttcttcttgttcaataatcttttcctgtcactacgttgttgattcttattttcacatgtaatagcttcatgccc |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6385273 |
gtcgcaatgaacaagtcacccttctcttcttcttgttcaataatcttttcctgtcactacgttgttgattcttattttcacatgtaatagcttcatgccc |
6385174 |
T |
|
| Q |
219 |
tatttgattacacttggtgcgcttaacatcaggtcttctccaacctctaaatggtgggtgacctttctttccagtgtagacaaggaagtgaagattttct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6385173 |
tatttgattacacttggtgcgcttaacatcaggtcttctccaacctctaaatggtgggtgacctttctttccagtgtagacaaggaagtgaagattttct |
6385074 |
T |
|
| Q |
319 |
tcgaatttcattattttcttttacattggctgactgacgttgagtcaacttcaatttcaccaaaatccttcttgaatttgcccaca |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6385073 |
tcgaatttcattattttcttttacattggctgactgacgttgagtcgacttcaatttcaccaaaatccttcttgaatttgcccaca |
6384988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 6838342 - 6838678
Alignment:
| Q |
18 |
cattgcttagtttcctgaatagatcgttgttatgtttcatgtggttagtacacccattgtcaatcaatcaattctcacttgattcgatgttagagaaaca |
117 |
Q |
| |
|
||||| |||||| |||||| | ||| || |||||| |||||||||| ||||| ||| | ||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
6838342 |
cattgattagttccctgaaaaaatccttattatgtgtcatgtggttggtacaaccactatcaatcagccaattctcacttgattcgatgctagagaaaca |
6838441 |
T |
|
| Q |
118 |
tgtcgcaatgaacaagtcacccgtctcttcttcttgttcaataatcttttcctg-tcactacgttgttgattcttattttcacatgtaatagcttcatgc |
216 |
Q |
| |
|
||| |||| ||| |||| | || |||||| ||||| |||| || |||| ||| ||| || ||||||||||| |||||| ||| ||| |||||||||| |
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| T |
6838442 |
tgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatcattatgttgttgattcctatttttacaaataacagcttcatgc |
6838541 |
T |
|
| Q |
217 |
cctatttgattacacttggtgcgcttaacatcaggtcttctccaacctctaaatggtgggtgacctttctttcca--gtgtagacaaggaagtgaagatt |
314 |
Q |
| |
|
|| ||||||||||||||||| | |||| |||||||||||||||||| |||||| ||||| ||||||||||||||| |||| ||| ||| | |||||| |
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|
| T |
6838542 |
cccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacagtgttgacgtggaggataagatt |
6838641 |
T |
|
| Q |
315 |
ttcttcgaatttcattattttcttttacattggctga |
351 |
Q |
| |
|
||||||||||| |||| |||||| || |||||||||| |
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|
| T |
6838642 |
ttcttcgaattgcattcttttctgttgcattggctga |
6838678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 351
Target Start/End: Original strand, 2797341 - 2797483
Alignment:
| Q |
211 |
tcatgccctatttgattacacttggtgcgcttaacatcaggtcttctccaacctctaaatggtgggtgacctttctttc--cagtgtagacaaggaagtg |
308 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| |||||||||||||||||| |||||| ||||| ||||||||||||| |||||| |||| ||| | |
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|
| T |
2797341 |
tcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacagtgttgacatggaggat |
2797440 |
T |
|
| Q |
309 |
aagattttcttcgaatttcattattttcttttacattggctga |
351 |
Q |
| |
|
||||||||||||||||| |||| |||||| || |||||||||| |
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|
| T |
2797441 |
aagattttcttcgaattacattcttttctgttgcattggctga |
2797483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 397
Target Start/End: Original strand, 8977125 - 8977461
Alignment:
| Q |
54 |
tcatgtggttagtacacccattgtcaatcaatcaattctcacttgattcgatgttagagaaacatgtcgcaatgaacaagtcacccgtctcttcttcttg |
153 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||| |||||| |||| ||||||||||||| |||| ||| |||| | || ||||| | ||| |
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|
| T |
8977125 |
tcatgtggttagtacaaccactgtcaatcagccaattctcatttgatttgatgctagagaaacatgttgcaacgaataagtgatcctcatcttccttttg |
8977224 |
T |
|
| Q |
154 |
ttcaataatcttttcct-gtcactacgttgttgattcttattttcacatgtaatagcttcatgccctatttgattacacttggtgcgcttaacatcaggt |
252 |
Q |
| |
|
|||| || |||| ||| ||| || |||||||||| |||||| ||| ||| | |||||||||| ||||||||| |||| |||| |||||||| |
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|
| T |
8977225 |
atcaacaacctttgcctcatcaatatcttgttgattcctatttttacaaataacaacttcatgccccatttgatta------gtgcacttagcatcaggt |
8977318 |
T |
|
| Q |
253 |
cttctccaacctctaaatggtgggtgacctttctttc--cagtgtagacaaggaagtgaagattttcttcgaatttcattattttcttttacattggctg |
350 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||| |||| || ||| || | || ||||||||||| |||||||||| |||||| || ||||||||| |
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|
| T |
8977319 |
cttctccaacatctaaagggtggatgacctttttttccacaatgttgaaatggcgtataagattttctttgaatttcattcttttctgttgcattggctg |
8977418 |
T |
|
| Q |
351 |
actgacgttgagtcaacttcaatttcaccaaaatccttcttgaattt |
397 |
Q |
| |
|
| | |||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
8977419 |
att----ttgagtacacttcaatttcatcaaaatccttcttgaattt |
8977461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 28600157 - 28600248
Alignment:
| Q |
28 |
tttcctgaatagatcgttgttatgtttcatgtggttagtacacccattgtcaatcaatcaattctcacttgattcgatgttagagaaacatg |
119 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||||||| | |||||||| | |||||||||||||||||||| |||||||||||| |
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|
| T |
28600157 |
tttcctgaataaatccttgttatgtgtcatgtggttagtacaactgttgtcaattagccaattctcacttgattcgattctagagaaacatg |
28600248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 397
Target Start/End: Original strand, 28600447 - 28600531
Alignment:
| Q |
309 |
aagattttcttcgaatttcattattttcttttacattggctgactgacgttgagtcaacttcaatttcaccaaaatccttcttgaattt |
397 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| | || ||||| |||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
28600447 |
aagattttcttcaaatttcattcttttcttttgctttcgctgat----gttgagcctactccaatttcaccaaaatccttcttgaattt |
28600531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 32526237 - 32525901
Alignment:
| Q |
18 |
cattgcttagtttcctgaatagatcgttgttatgtttcatgtggttagtacacccattgtcaatcaatcaattctcacttgattcgatgttagagaaaca |
117 |
Q |
| |
|
||||| |||||| ||||| || ||| || |||||| |||||||||| ||||| ||| | ||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
32526237 |
cattgtttagttccctgattaaatccttattatgtgtcatgtggttggtacaaccactatcaatcagccaattctcacttgattcgatgctagagaaaca |
32526138 |
T |
|
| Q |
118 |
tgtcgcaatgaacaagtcacccgtctcttcttcttgttcaataatcttttcctg-tcactacgttgttgattcttattttcacatgtaatagcttcatgc |
216 |
Q |
| |
|
||| |||| ||| |||| | || |||||| ||||| |||| || |||| ||| ||| || ||||||||||| |||||| ||| || |||||||||| |
|
|
| T |
32526137 |
tgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatcattatgttgttgattcctatttttacaaatatcagcttcatgc |
32526038 |
T |
|
| Q |
217 |
cctatttgattacacttggtgcgcttaacatcaggtcttctccaacctctaaatggtgggtgacctttctttcc--agtgtagacaaggaagtgaagatt |
314 |
Q |
| |
|
|| ||||||||||||||||| | |||| |||||||||||||||||| ||| || ||||| |||||||||||||| ||||| |||| ||| | |||||| |
|
|
| T |
32526037 |
cccatttgattacacttggtacacttagcatcaggtcttctccaacatcttaagggtggatgacctttctttccatagtgttgacatggaggataagatt |
32525938 |
T |
|
| Q |
315 |
ttcttcgaatttcattattttcttttacattggctga |
351 |
Q |
| |
|
||||||||||| |||| |||||| || |||||||||| |
|
|
| T |
32525937 |
ttcttcgaattacattcttttctgttgcattggctga |
32525901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 20082871 - 20082971
Alignment:
| Q |
18 |
cattgcttagtttcctgaatagatcgttgttatgtttcatgtggttagtacacccattgtcaatcaatcaattctcacttgattcgatgttagagaaaca |
117 |
Q |
| |
|
|||||||||||| ||| |||| ||| ||||||||| |||| ||||||||||| |||||||||||||| ||||||| |||||||| | | |||||||||| |
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|
| T |
20082871 |
cattgcttagttccctaaataaatccttgttatgtgtcatttggttagtacaaccattgtcaatcaaccaattctatcttgattcaaagctagagaaaca |
20082970 |
T |
|
| Q |
118 |
t |
118 |
Q |
| |
|
| |
|
|
| T |
20082971 |
t |
20082971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 20333442 - 20333514
Alignment:
| Q |
209 |
cttcatgccctatttgattacacttggtgcgcttaacatcaggtcttctccaacctctaaatggtgggtgacc |
281 |
Q |
| |
|
||||||| ||||||| ||| |||||| ||| ||| |||| || |||||||||| | |||||||||||||||| |
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|
| T |
20333442 |
cttcatgacctatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacc |
20333514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 404
Target Start/End: Complemental strand, 2803268 - 2802915
Alignment:
| Q |
47 |
ttatgtttcatgtggttagtacacccattgtcaatcaatcaattctcacttgattcgatgttagagaaacatgtcgcaatgaacaagtcacccgtctctt |
146 |
Q |
| |
|
|||||| ||||| |||||||||| ||| ||| ||| || ||||||||||||||||||||| ||||||||||||| | || ||||||| | | ||| | |
|
|
| T |
2803268 |
ttatgtgtcatggggttagtacaaccactgttaataaaccaattctcacttgattcgatgctagagaaacatgttgtaacaaacaagtaatc---ctcct |
2803172 |
T |
|
| Q |
147 |
cttcttgttcaataatcttt-tcctgtcactacgttgttgattcttattt-tcacatgtaatagcttcatgccctatttgattacacttggtgcgcttaa |
244 |
Q |
| |
|
| ||||| ||| | |||| || |||||| |||||||||||| ||| | |||| ||| | ||||| | || |||||||||||| ||| |||| |
|
|
| T |
2803171 |
cctcttgaccaacatcctttgccccatcactattttgttgattcttttttcttacatataacaacttcacgtcccatttgattacac--aatgcacttag |
2803074 |
T |
|
| Q |
245 |
catcaggtcttctccaacctctaaatggtgggtgacctttctttc--cagtgtagacaaggaagtgaagattttcttcgaatttcattattt-tctttta |
341 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||| || ||| ||||||| | ||||||||| |||||||||||| ||| | |||| |
|
|
| T |
2803073 |
catcaggtcttctccaccctataaatggtgaatgacctttctttccacaatgttgacaaggtggataagattttcatcgaatttcattctttatgttttg |
2802974 |
T |
|
| Q |
342 |
cattggctgactgacgttgagtcaacttcaatttcaccaaaatccttcttgaatttgcccaca |
404 |
Q |
| |
|
|||||| |||| ||||| | ||| |||||||||||||||| || |||||||| |||||| |
|
|
| T |
2802973 |
cattgg----ctgatgttgatcctactccaatttcaccaaaatcttttttgaattttcccaca |
2802915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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