View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_46 (Length: 412)
Name: NF8888_low_46
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 10706637 - 10707021
Alignment:
| Q |
20 |
gcatgcatagtatttatacgaaatactagcaatatatgtgaggcaaataagcccatagctttgcttgtcattaggaaattaaggttgatctttgcaggtt |
119 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10706637 |
gcatgcatagtatttatacgaaatgctagcaatatatgcgaggcaaataagcctatagctttgcttgtcattaggaaattaaggttgatctttgcaggtt |
10706736 |
T |
|
| Q |
120 |
taccagcccacatttgattgtttctaacgtgtaagttaatgttaatcttatacaggtgtttcttacttactccaaagttgttaccagatctgcaatatag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10706737 |
taccagcccacatttgattgtttctaacgtgtaagttaatgttaatcttatacaggtgtttcttacttaccccaaagttgttaccagatctgcaatatag |
10706836 |
T |
|
| Q |
220 |
tgaggcatgcagtatattgaatgtaatgaatggtccttggattgagcaaccctcaaagggtaatttctcataccaaaaactacatttatcctcttcgnnn |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10706837 |
tgaggcatgcagtatattgaatgtaatgaatggtccttggattgagcaaccctcaaagggtaatttctcataccaaaaactacatttatcctcttcgttt |
10706936 |
T |
|
| Q |
320 |
nnnncccttcattgttgatattgattaccatacattttctttttgataatcagtctggaccgctggtgatcgatggagtattatc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10706937 |
tttccccttcattgttgatattgattaccatacattttctttttgataatcagtctggaccgctggtgatcgatggagtattatc |
10707021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 47448345 - 47448745
Alignment:
| Q |
19 |
agcatgcatagtatttatacgaaatacta------gcaatatatgtgaggcaaataagcccatagctttgcttgtcattaggaaattaaggttgatcttt |
112 |
Q |
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||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47448345 |
agcatacatagtatttatacgaaatactaataagagcagtatatgtgaggcaaataagcccatagctttgcttgtcattaggaaattaaggctgatcttt |
47448444 |
T |
|
| Q |
113 |
gcaggtttaccag--------------------cccacatttgattgtttctaacgtgtaagttaatgttaatcttatacaggtgtttcttacttactcc |
192 |
Q |
| |
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|| ||||| |||| ||||||||||||||||||||||| |||||| | |||||||| | |||||||||||||||||| || |
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| T |
47448445 |
gccggtttgccagtcactaatgtgctttgttcccccacatttgattgtttctaacgcgtaagtgacaattaatcttctgcaggtgtttcttacttacccc |
47448544 |
T |
|
| Q |
193 |
aaagttgttaccagatctgcaatatagtgaggcatgcagtatattgaatgtaatgaatggtccttggattgagcaaccctcaaagggtaatttctcatac |
292 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
47448545 |
aaagttgttaccagatctgcaatatagcgaggcatgcagtatattgaatgtaatgaatgggccttggattgagcaaccctcaaagggtaatttctcgtac |
47448644 |
T |
|
| Q |
293 |
caaaaactacatttatcctcttcgnnnnnnncccttcattgttgatattgattaccatacattttctttttgataatcagtctggaccgctggtgatcga |
392 |
Q |
| |
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||||||||||||||||| |||| || |||||||||| || |||| ||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
47448645 |
caaaaactacatttatcatctt-----------ttttattgttgataatgcttacaatacattttctttctgataatcagtctggactgccggtgatcga |
47448733 |
T |
|
| Q |
393 |
tggagtattatc |
404 |
Q |
| |
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|||||||||||| |
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| T |
47448734 |
tggagtattatc |
47448745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 126 - 310
Target Start/End: Complemental strand, 15840820 - 15840636
Alignment:
| Q |
126 |
cccacatttgattgtttctaacgtgtaagttaatgttaatcttatacaggtgtttcttacttactccaaagttgttaccagatctgcaatatagtgaggc |
225 |
Q |
| |
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|||||||||| | ||||||||| |||||| | |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
15840820 |
cccacatttgttcatttctaacgcgtaagtgatgattaatcttatgcaggtgtttcttacttacaccaaagctgttaccagatctgcaatatagtgaggc |
15840721 |
T |
|
| Q |
226 |
atgcagtatattgaatgtaatgaatggtccttggattgagcaaccctcaaagggtaatttctcataccaaaaactacatttatcc |
310 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |
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| T |
15840720 |
atgcagtatattgaatgtaatgaatggcccttggattgagcaaccctcaaagggtaatttctcatgccgaaaactacatctatcc |
15840636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 140 - 404
Target Start/End: Complemental strand, 15826588 - 15826333
Alignment:
| Q |
140 |
tttctaacgtgtaagttaatgttaatcttatacaggtgtttcttacttactccaaagttgttaccagatctgcaatatagtgaggcatgcagtatattga |
239 |
Q |
| |
|
||||||||| |||||| | |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15826588 |
tttctaacgcgtaagtgacgattaatcttatgcaggtgtttcttacttacaccaaagctgttaccagatctgcaatatagtgaggcatgcagtatattga |
15826489 |
T |
|
| Q |
240 |
atgtaatgaatggtccttggattgagcaaccctcaaagggtaatttctcataccaaaaactacatttatcctcttcgnnnnnnncccttcattgttgata |
339 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||| |||||||||||||||||| |||||| ||| ||| ||||| | || | |||||||| |
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| T |
15826488 |
atgtaatgaatggcccttggattgagaagccctcgaagggtaatttctcatactgaaaactgcatatattctctt---------tctttaactgttgata |
15826398 |
T |
|
| Q |
340 |
ttgattaccatacattttctttttgataatcagtctggaccgctggtgatcgatggagtattatc |
404 |
Q |
| |
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||| |||||||||||||| | ||| |||||| |||||| ||||||||||||||||||||||| |
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| T |
15826397 |
ttgcttaccatacattttttcgttgtaaatcagcctggactactggtgatcgatggagtattatc |
15826333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 140 - 277
Target Start/End: Complemental strand, 15821083 - 15820946
Alignment:
| Q |
140 |
tttctaacgtgtaagttaatgttaatcttatacaggtgtttcttacttactccaaagttgttaccagatctgcaatatagtgaggcatgcagtatattga |
239 |
Q |
| |
|
||||||||| |||||| | |||||| ||| ||||||||||||||||| ||||| |||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
15821083 |
tttctaacgcgtaagtgatgattaatcgtatgtaggtgtttcttacttacatcaaagctgttgccagatcttcaatatagcgaggcatgcagtatattga |
15820984 |
T |
|
| Q |
240 |
atgtaatgaatggtccttggattgagcaaccctcaaag |
277 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||| |
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| T |
15820983 |
atgtaatgaacgggccttggattgagcaaccctcaaag |
15820946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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