View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_48 (Length: 399)
Name: NF8888_low_48
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 37996077 - 37996461
Alignment:
| Q |
1 |
ctgacgaggcactggggatggaacatcaacttgcttacgtggcactggggtcgtttgtggtaaattcagatcagccattggttgaacaggagcatcgacg |
100 |
Q |
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| T |
37996077 |
ctgacgaggcactggggatggaacatcaacttgcttacgtggcactggggtcgtttgtggtaaattcagatcagccattggttgaacaggagcatcgacg |
37996176 |
T |
|
| Q |
101 |
tcattaagattaaacgtcgatgtttcatccttaagtggccataaaagaggggctgtacttgtatctgatgttgaagtaggggttttcttgtcgggatcgg |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37996177 |
tcattaagattaaacgtcgatgtttcatcgttaagtggccataaaagaggggctgtacttgtatctgatgttgaagtaggggttttcttgtcgggatcgg |
37996276 |
T |
|
| Q |
201 |
agcaatcattcccgctgagtcgatgattagttgatgacactttggcaatatttctcttcatgacatcaactttctttccaccttctctaagaccactcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37996277 |
agcaatcattcccgctgagtcgatgattagttgatgacactttggcaatatttctcttcatgacatcaactttctttccaccttctctaagaccactcat |
37996376 |
T |
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| Q |
301 |
tgcagcatcataagtttccatagctacagcaccttcctcagcatatctgatggcttcccggcacagattggcataccgtgatgtc |
385 |
Q |
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| T |
37996377 |
tgcagcatcataagtttccatagctacagcaccttcctcagcatatctgatggcttcccggcacagattggcataccgtgatgtc |
37996461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 369
Target Start/End: Complemental strand, 35698881 - 35698764
Alignment:
| Q |
252 |
ttctcttcatgacatcaactttctttccaccttctctaagaccactcattgcagcatcataagtttccatagctacagcaccttcctcagcatatctgat |
351 |
Q |
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|||| ||||| ||| |||| |||||| |||||||| ||| |||| |||| ||||||| |||||||||||||| ||| || || || |||||||||||||| |
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| T |
35698881 |
ttcttttcatcacagcaaccttcttttcaccttctttaaaaccagtcatagcagcattataagtttccatagttaccgccccatcttcagcatatctgat |
35698782 |
T |
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| Q |
352 |
ggcttcccggcacagatt |
369 |
Q |
| |
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||||||||| || ||||| |
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| T |
35698781 |
ggcttcccgacatagatt |
35698764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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