View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_49 (Length: 399)
Name: NF8888_low_49
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_49 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Original strand, 13308651 - 13309043
Alignment:
| Q |
7 |
gttttgcaaatgaatgggaccctaactcacctcatataggaattgacatcaacacgattgagtcttcgatcagtgttccatggccaatcgatcgtcaacc |
106 |
Q |
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| T |
13308651 |
gttttgcaaatgaatgggaccctaactcacctcatataggaattgacatcaacacgattgagtcttcgatcagtgttccatggccaatcgatcgtcaacc |
13308750 |
T |
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| Q |
107 |
tcaaggaacgataggaaaggctcgcataagttataatactgcctcaaaagacttgagtgtgtttgtaacttatccaaatagtcctgccaaagttggtgtt |
206 |
Q |
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| T |
13308751 |
tcaaggaacgataggaaaggctcgcataagttataatactgcctcaaaagacttgagtgtatttgtaacttatccaaatagtcctgccaaagttgatgtt |
13308850 |
T |
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| Q |
207 |
attgcgtcttatcctattgattttgcctctgttctgtcggaatgggtatatgttggtttctcaggtgccaccggtcaagttgctgaaacacatgatattc |
306 |
Q |
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| T |
13308851 |
attgtgtcttatcctattgattttgcctctgttctgtcggaatgggtatatgttggtttctcaggtgccaccggtcaagttgctgaaacacatgatattc |
13308950 |
T |
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| Q |
307 |
tttcttggtcctttgtttcaaacttgtagagagcattgcatcatggagatgaaaaattaattgcatgtccagagaatgaaatatgttgctctt |
399 |
Q |
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| T |
13308951 |
tttcttggtcctttgtttcaaacttgtagagagcattgcatcatggagatgaaaaattaattgcatgtccagagaatgaaatatgttgctctt |
13309043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 342
Target Start/End: Original strand, 13333841 - 13334154
Alignment:
| Q |
29 |
taactcacctcatataggaattgacatcaacacgattgagtcttcgatcagtgttccatggccaatcgatcgtcaacctcaaggaacgataggaaaggct |
128 |
Q |
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| T |
13333841 |
taactcacctcatataggaatcgacatcaacacgattaggtcttcagctactgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggca |
13333940 |
T |
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| Q |
129 |
cgcataagttataatactgcctcaaaagacttgagtgtgtttgtaacttatccaaatagtcctgccaaagttggtgttattgcgtcttatcctattgatt |
228 |
Q |
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| T |
13333941 |
cacataagttataatcctgcctcgaaaaaattgactgcgctggtaacttatctaaatggtcctgtcatagaggaaactgctgtatcttatactgttgatt |
13334040 |
T |
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| Q |
229 |
ttgcctctgttctgtcggaatgggtatatgttggtttctcaggtgccaccggtcaagttgctgaaacacatgatattctttcttggtcctttgtttcaaa |
328 |
Q |
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| T |
13334041 |
ttgcggctattctgcccgaatatgtcctggttggtttctccggtgccacaggtgaacttgccgaaacacatgacattctttcatggtctttcacttcaaa |
13334140 |
T |
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| Q |
329 |
cttgtagagagcat |
342 |
Q |
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| T |
13334141 |
tttgtagagagcat |
13334154 |
T |
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