View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_5 (Length: 837)
Name: NF8888_low_5
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 10 - 575
Target Start/End: Original strand, 19271395 - 19271960
Alignment:
| Q |
10 |
agaagcagagaaagtgcatgagaagatccaaatccgttgggctttggccctcttgttgaaaactttgaaatgagtatttattttaagtgttcactattat |
109 |
Q |
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| T |
19271395 |
agaagcagagaaagtgcatgagaagatccaaatccgttgggctttggccctcttgttgaaaactttgaaatgagtatttattttaagtgttcactattat |
19271494 |
T |
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| Q |
110 |
actttttcaaggggaattcttaccattgataaggttaatcctggaatgaaagggaatgcaatgttgtagttagaggtctatgcaactactacattacgtt |
209 |
Q |
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| T |
19271495 |
actttttcaaggggaactcttaccattgataaggttaatcctggaatgaaagggaatgcaatgttgtagttagaggtctatgcaactactacattgcgtt |
19271594 |
T |
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| Q |
210 |
gttatgcctttcacaatgcctcttccaccaaaagttgaattctaagtagactaaccgtggaatggtacttaaaattatcaaaacttctaacgatcgttga |
309 |
Q |
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| T |
19271595 |
gttatgcctttcacaatgcctcttccaccaaaagttgaattctaagtagactaaccgtggaatggtacttaaaattatcaaaaattctaacgatcgttga |
19271694 |
T |
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| Q |
310 |
cgatactctttataaatgaaaacaaatgaccttcctcatctttaagatgaagatggtgatctggttgacgtaggtttaatatgtgctacatatttattta |
409 |
Q |
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| T |
19271695 |
cgatactctttataaatgaaaacaaatgaccttcctcatctttaagatgaagatggtgatgtggttgacgtaggtttaatatgtgctacatatttattta |
19271794 |
T |
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| Q |
410 |
atgttgtttaaatcaaacttgtatcaattaaatcattatctcaaccgtaaaatgaagaggaccattaacctctactattatcactaactcaatgttatca |
509 |
Q |
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| T |
19271795 |
atgttgtttaaatcaaacttgtatcaattaaattattatctcaaccgtaaaatgaagaggaccattaacctctactattatcactaactcaatgttatca |
19271894 |
T |
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| Q |
510 |
atttagtgcctatttattgcatccttacccttttttcagttggagggatcattgtagcataggtaa |
575 |
Q |
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| T |
19271895 |
atttagtgcctatttattgcatccttacccttttttcagttggagggatcattgtagcataggtaa |
19271960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 632 - 818
Target Start/End: Original strand, 19271956 - 19272142
Alignment:
| Q |
632 |
ggtaaagtatctccagaactcaggacctgttatttaaggggcacaccttggtaaattagttgcttgcaatttccagttaccttcacttactctattggtt |
731 |
Q |
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| T |
19271956 |
ggtaaagtatcttcagaactcaggacctgttatttaaggggcacaccttggtaaattagttgcttgcaatttccagttaccttcacttactctattggtt |
19272055 |
T |
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| Q |
732 |
ctcgattatggtgcatttcatcatattactcttaataaggttattttctcctctcatcacatctagctacttacctagtatcgtctc |
818 |
Q |
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| T |
19272056 |
ctcgattatggtgcatttcatcatattactcttaataaggttattttctcctctcatcacatctagctacttacctagtatcgtctc |
19272142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 395 - 478
Target Start/End: Complemental strand, 14825092 - 14825007
Alignment:
| Q |
395 |
ctacatatttatttaatgttgtttaaatcaaacttgtatcaattaaatcattatctcaaccgt--aaaatgaagaggaccattaac |
478 |
Q |
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| T |
14825092 |
ctacatatttattttatgttggtttaatcaaactgatatcaatcaaataattatttcaatcgttaaaaataaagatgaccattaac |
14825007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 21708058 - 21708109
Alignment:
| Q |
382 |
ggtttaatatgtgctacatatttatttaatgttgtttaaatcaaacttgtat |
433 |
Q |
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| T |
21708058 |
ggttcaatatgagctacatatttattttttgttgtttaaatcaaactagtat |
21708109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 448
Target Start/End: Complemental strand, 29591541 - 29591452
Alignment:
| Q |
359 |
aagatggtgatctggttgacgtaggtttaatatgtgctacatatttatttaatgttgtttaaatcaaacttgtatcaattaaatcattat |
448 |
Q |
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| T |
29591541 |
aagatggtgatttgattgatgtcggtttaatacgatgtacatatttattttatgttatttgaatcaatctgatatcaattaagtcattat |
29591452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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