View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_51 (Length: 391)

Name: NF8888_low_51
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_51
NF8888_low_51
[»] chr6 (23 HSPs)
chr6 (66-350)||(15576404-15576688)
chr6 (70-312)||(15574462-15574708)
chr6 (132-309)||(16526916-16527093)
chr6 (1-67)||(5994698-5994764)
chr6 (1-66)||(5004061-5004126)
chr6 (1-66)||(23925335-23925400)
chr6 (1-66)||(25506541-25506606)
chr6 (1-66)||(25550295-25550360)
chr6 (1-66)||(30824529-30824594)
chr6 (1-66)||(35091676-35091741)
chr6 (2-66)||(13825703-13825767)
chr6 (3-66)||(11279837-11279900)
chr6 (1-64)||(25991852-25991915)
chr6 (163-308)||(12972738-12972883)
chr6 (1-67)||(33298084-33298150)
chr6 (14-66)||(5489132-5489184)
chr6 (4-67)||(15391614-15391677)
chr6 (12-68)||(13490191-13490247)
chr6 (5-67)||(11053701-11053764)
chr6 (5-66)||(30114444-30114505)
chr6 (245-351)||(17860722-17860828)
chr6 (70-124)||(17860886-17860940)
chr6 (152-272)||(8322602-8322722)
[»] chr7 (17 HSPs)
chr7 (70-325)||(21471316-21471575)
chr7 (70-309)||(5721920-5722164)
chr7 (1-66)||(12978455-12978520)
chr7 (1-66)||(18304392-18304457)
chr7 (5-67)||(4941581-4941643)
chr7 (1-67)||(10439936-10440002)
chr7 (1-67)||(4952397-4952463)
chr7 (1-67)||(13831499-13831565)
chr7 (1-67)||(13839530-13839596)
chr7 (2-66)||(30244775-30244839)
chr7 (151-274)||(7955796-7955920)
chr7 (8-67)||(21663030-21663089)
chr7 (8-66)||(30245568-30245626)
chr7 (8-58)||(30255420-30255470)
chr7 (345-391)||(39178521-39178567)
chr7 (155-307)||(1074076-1074229)
chr7 (150-202)||(16166702-16166754)
[»] chr5 (23 HSPs)
chr5 (70-327)||(17027056-17027316)
chr5 (151-335)||(24841367-24841551)
chr5 (78-309)||(22754483-22754718)
chr5 (141-325)||(11274687-11274871)
chr5 (1-67)||(24956846-24956912)
chr5 (1-67)||(24965309-24965375)
chr5 (1-69)||(1728159-1728227)
chr5 (1-67)||(20372913-20372979)
chr5 (1-66)||(20398635-20398700)
chr5 (1-66)||(29186278-29186343)
chr5 (1-66)||(43598046-43598111)
chr5 (1-66)||(43603538-43603603)
chr5 (1-66)||(43609030-43609095)
chr5 (3-67)||(28852549-28852613)
chr5 (3-66)||(28843940-28844003)
chr5 (1-67)||(23350076-23350142)
chr5 (1-66)||(19223555-19223620)
chr5 (1-66)||(31421789-31421854)
chr5 (3-66)||(31410890-31410953)
chr5 (149-335)||(23125266-23125454)
chr5 (138-292)||(19331160-19331315)
chr5 (5-63)||(41099780-41099838)
chr5 (17-66)||(21929236-21929285)
[»] chr8 (23 HSPs)
chr8 (70-335)||(16052604-16052873)
chr8 (131-315)||(28901685-28901869)
chr8 (1-66)||(17973565-17973630)
chr8 (141-289)||(22894905-22895054)
chr8 (1-66)||(30938282-30938347)
chr8 (1-67)||(39837562-39837628)
chr8 (1-66)||(26876054-26876119)
chr8 (1-66)||(39845605-39845670)
chr8 (3-66)||(1407075-1407138)
chr8 (1-67)||(26873604-26873670)
chr8 (1-66)||(4839782-4839847)
chr8 (1-66)||(25579812-25579877)
chr8 (1-67)||(17664640-17664706)
chr8 (1-66)||(17683796-17683861)
chr8 (148-335)||(12755799-12755987)
chr8 (241-335)||(24119925-24120019)
chr8 (5-67)||(6670710-6670772)
chr8 (5-67)||(4582203-4582265)
chr8 (244-301)||(5570508-5570565)
chr8 (9-66)||(6663042-6663099)
chr8 (9-66)||(6743444-6743501)
chr8 (243-309)||(28292459-28292525)
chr8 (151-266)||(17099875-17099990)
[»] chr3 (25 HSPs)
chr3 (70-312)||(11520659-11520905)
chr3 (1-66)||(50824352-50824417)
chr3 (1-66)||(50851443-50851508)
chr3 (2-66)||(17628265-17628329)
chr3 (1-67)||(8154644-8154710)
chr3 (1-67)||(9525434-9525500)
chr3 (1-67)||(41006555-41006621)
chr3 (1-67)||(41015335-41015401)
chr3 (1-67)||(14538605-14538671)
chr3 (1-67)||(17933654-17933720)
chr3 (1-67)||(27341335-27341401)
chr3 (1-66)||(9555108-9555173)
chr3 (2-66)||(2211239-2211303)
chr3 (2-66)||(28470218-28470282)
chr3 (4-67)||(17919198-17919261)
chr3 (151-291)||(5632859-5633000)
chr3 (4-67)||(16816207-16816269)
chr3 (5-67)||(8197700-8197762)
chr3 (9-66)||(18039011-18039068)
chr3 (4-66)||(21186747-21186809)
chr3 (5-66)||(30480-30541)
chr3 (5-62)||(18349560-18349617)
chr3 (4-64)||(43470556-43470615)
chr3 (39-67)||(6958978-6959006)
chr3 (218-266)||(8770880-8770928)
[»] chr4 (13 HSPs)
chr4 (210-334)||(1696893-1697017)
chr4 (1-68)||(52295602-52295669)
chr4 (1-67)||(12996475-12996541)
chr4 (1-67)||(8094282-8094348)
chr4 (1-66)||(8103088-8103153)
chr4 (1-66)||(27343691-27343756)
chr4 (1-66)||(4523680-4523745)
chr4 (1-66)||(21532304-21532369)
chr4 (4-66)||(12428481-12428543)
chr4 (9-66)||(10638328-10638385)
chr4 (138-204)||(15787861-15787927)
chr4 (4-67)||(33188765-33188827)
chr4 (16-66)||(3424331-3424381)
[»] chr2 (30 HSPs)
chr2 (1-67)||(15944557-15944623)
chr2 (1-67)||(35138592-35138658)
chr2 (1-67)||(35146928-35146994)
chr2 (1-67)||(41233844-41233910)
chr2 (1-66)||(14582925-14582990)
chr2 (1-66)||(15953072-15953137)
chr2 (1-66)||(17687398-17687463)
chr2 (1-66)||(38168357-38168422)
chr2 (3-67)||(42565931-42565995)
chr2 (3-66)||(42574555-42574618)
chr2 (1-67)||(20621517-20621583)
chr2 (1-66)||(20372313-20372378)
chr2 (1-66)||(25483601-25483666)
chr2 (1-66)||(25491207-25491272)
chr2 (1-66)||(44372705-44372770)
chr2 (1-66)||(44388616-44388681)
chr2 (168-274)||(39730111-39730217)
chr2 (149-274)||(22389140-22389265)
chr2 (5-67)||(24292371-24292433)
chr2 (5-66)||(24285696-24285757)
chr2 (5-66)||(34070608-34070669)
chr2 (5-66)||(42249459-42249520)
chr2 (243-335)||(17415496-17415588)
chr2 (5-64)||(26903337-26903396)
chr2 (4-66)||(27606647-27606709)
chr2 (258-335)||(28278746-28278823)
chr2 (1-38)||(35037884-35037921)
chr2 (5-66)||(21322814-21322875)
chr2 (16-66)||(20917520-20917570)
chr2 (4-66)||(35303737-35303799)
[»] chr1 (19 HSPs)
chr1 (1-67)||(31548522-31548588)
chr1 (1-66)||(31539954-31540019)
chr1 (3-66)||(35104066-35104129)
chr1 (1-67)||(3432890-3432956)
chr1 (1-67)||(29221488-29221554)
chr1 (141-229)||(23223131-23223220)
chr1 (1-66)||(32137754-32137819)
chr1 (1-66)||(41746693-41746758)
chr1 (9-66)||(44320200-44320257)
chr1 (5-66)||(21498902-21498963)
chr1 (150-226)||(31313020-31313097)
chr1 (17-64)||(28457556-28457604)
chr1 (4-64)||(51058391-51058450)
chr1 (256-327)||(21452150-21452221)
chr1 (151-202)||(27754786-27754837)
chr1 (178-247)||(14397286-14397356)
chr1 (32-66)||(20314058-20314092)
chr1 (148-202)||(31313107-31313161)
chr1 (5-66)||(52100017-52100078)
[»] scaffold0156 (1 HSPs)
scaffold0156 (1-66)||(35356-35421)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-66)||(121228-121293)
[»] scaffold0497 (1 HSPs)
scaffold0497 (1-66)||(10993-11058)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-66)||(33035-33100)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-66)||(15813-15878)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-66)||(40833-40898)
[»] scaffold0209 (1 HSPs)
scaffold0209 (3-66)||(86-149)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-67)||(23463-23522)
[»] scaffold0173 (1 HSPs)
scaffold0173 (4-67)||(932-995)
[»] scaffold0431 (1 HSPs)
scaffold0431 (4-66)||(139-201)
[»] scaffold0632 (1 HSPs)
scaffold0632 (1-66)||(4390-4455)
[»] scaffold0048 (1 HSPs)
scaffold0048 (20-66)||(7648-7694)
[»] scaffold0991 (1 HSPs)
scaffold0991 (5-66)||(377-438)
[»] scaffold0015 (1 HSPs)
scaffold0015 (5-68)||(192526-192589)
[»] scaffold0863 (1 HSPs)
scaffold0863 (5-67)||(376-438)
[»] scaffold0170 (1 HSPs)
scaffold0170 (4-66)||(7193-7255)
[»] scaffold0044 (2 HSPs)
scaffold0044 (5-67)||(81790-81852)
scaffold0044 (5-67)||(65542-65604)
[»] scaffold1487 (1 HSPs)
scaffold1487 (20-59)||(762-801)
[»] scaffold0990 (2 HSPs)
scaffold0990 (211-314)||(3134-3237)
scaffold0990 (131-183)||(3075-3127)
[»] scaffold0514 (1 HSPs)
scaffold0514 (5-67)||(10912-10974)
[»] scaffold1026 (1 HSPs)
scaffold1026 (168-304)||(2186-2323)
[»] scaffold0389 (1 HSPs)
scaffold0389 (5-67)||(415-477)
[»] scaffold0222 (1 HSPs)
scaffold0222 (4-66)||(20485-20547)
[»] scaffold0484 (1 HSPs)
scaffold0484 (17-66)||(11457-11507)
[»] scaffold0027 (1 HSPs)
scaffold0027 (33-67)||(65710-65744)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-66)||(61288-61347)


Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 66 - 350
Target Start/End: Complemental strand, 15576688 - 15576404
Alignment:
Q  66 agcatactttctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgccttcggtgtgtatggtgatatagaccttgaatgtctattt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  15576688 agcatactttctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgcctccagtgtgtatggtgatatagaccttgaatgtctattt 15576589  T
Q  166 agaattgcttcaatctcatagtaaggtacaatcacatgatgactgagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtat 265  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  15576588 cgaattgcttcaatctcatagtaaggtacaatcacatgatggctgagtgtgacaaatgccttgaccagccccaccggctttaggaggtatatacgtgtat 15576489  T
Q  266 cttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctga 350  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15576488 cttggaattttatttggttgaaagtaattgtatcttctctaagtttgttcctcttgcatggaaatggtaatatagttacgtctga 15576404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 70 - 312
Target Start/End: Original strand, 15574462 - 15574708
Alignment:
Q  70 tactttctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgcct---tcggtgtgtatggtgatatagaccttgaatgtctattta 166  Q
    ||||||| |||||||| ||||||||||||||| |||||| |||||||||||||  |||   |  ||||||||  ||||||| ||||||||||||||| ||    
T  15574462 tactttcccaaatatatcccaccttaacctcagccacgttataaccttgaaaagtcctctatatgtgtgtataatgatataaaccttgaatgtctatgta 15574561  T
Q  167 gaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtat 265  Q
     ||||||||||||||||||| ||| |||||||||||||  | | |||||||  |||||| ||||||||  |||   ||||||| || |||||| ||||||    
T  15574562 taattgcttcaatctcatagcaagatacaatcacatgacaagtagagtgtggtaaatgctttgaccagtgccacaagctttagaagatacatatgtgtat 15574661  T
Q  266 cttggaattttatctggttgaaagtaattgtatcttctctaagtttg 312  Q
    ||||||||  ||| |||||||||||||  ||||| ||||||||||||    
T  15574662 cttggaatcatatgtggttgaaagtaagagtatcctctctaagtttg 15574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 132 - 309
Target Start/End: Original strand, 16526916 - 16527093
Alignment:
Q  132 tgtgtatggtgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgac 230  Q
    ||||| || ||||||| ||||||||||||| ||||||||||||| ||| | |||| ||||||||||||||||| |||| |||||||| | ||| ||||||    
T  16526916 tgtgtgtgatgatatataccttgaatgtctgtttagaattgctttaatgttatagaaaggtacaatcacatgacgactggagtgtgaaatatgtcttgac 16527015  T
Q  231 cagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 309  Q
    ||| ||||  | ||||| |||||||||| |||||||||| |||| ||| ||||||||| |||  |||||||||||||||    
T  16527016 cag-cccactgactttaagaggtacatatgtgtatcttgaaattgtatgtggttgaaattaagagtatcttctctaagt 16527093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5994764 - 5994698
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5994764 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 5994698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5004126 - 5004061
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004126 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5004061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23925400 - 23925335
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23925400 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 23925335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25506541 - 25506606
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25506541 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 25506606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25550360 - 25550295
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25550360 cgactttaaaaatatgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 25550295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30824529 - 30824594
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30824529 cgactttaaaaatacaaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 30824594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35091676 - 35091741
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091676 cgactttaaaaatatgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 13825767 - 13825703
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13825767 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 13825703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 11279900 - 11279837
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11279900 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 11279837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25991915 - 25991852
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatga 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25991915 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaacatttggggtatga 25991852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 308
Target Start/End: Complemental strand, 12972883 - 12972738
Alignment:
Q  163 tttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgt 261  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||| | | | | |||| || | |||||| |    
T  12972883 tttagaattgattcaatctcatagcaaggtacaatcacatgatgattggagtgtggcaaatgccttgaccagcacta-ctgatttaagaagaacatacat 12972785  T
Q  262 gtatcttggaattttatctggttgaaagtaattgtatcttctctaag 308  Q
    |||||||||||||| |  | |||||||||||  ||||||||||||||    
T  12972784 gtatcttggaatttcaagtagttgaaagtaagggtatcttctctaag 12972738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33298150 - 33298084
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  33298150 cgactttaaaaatacgaataaaatgggtaaggatagagaaaagtggtcaaaagttggggtatgacag 33298084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 5489132 - 5489184
Alignment:
Q  14 acgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5489132 acgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5489184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 15391614 - 15391677
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  15391614 ctttaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttgggatatgacag 15391677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 13490247 - 13490191
Alignment:
Q  12 atacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacagc 68  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  13490247 atacgaataaaatggataaaaatagagaaaagtggtcaaaatttggggtatgacagc 13490191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 11053764 - 11053701
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||  ||||| |||||| |||||||||||||||||||||||||||||    
T  11053764 tttaaaaatacgaataaaatttggtaaaaatagaaaaaagtggtcaaaatttggggtatgacag 11053701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 30114505 - 30114444
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  30114505 tttaaaaatacgaataaaatttggtaaaaataga-aaaagtggtcaaaatttggggtatgaca 30114444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 351
Target Start/End: Complemental strand, 17860828 - 17860722
Alignment:
Q  245 ttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttac 344  Q
    |||||||||||||| |||||| || ||||| ||| |||||||||||||  |||| ||||||||   |||||  |||||||||||  |||||  ||||||     
T  17860828 ttaggaggtacatatgtgtatattagaattgtatgtggttgaaagtaagagtatgttctctaaaaatgttccgcttgcatggaagaggtaagctagttaa 17860729  T
Q  345 gtctgat 351  Q
    |||||||    
T  17860728 gtctgat 17860722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 17860940 - 17860886
Alignment:
Q  70 tactttctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatg 124  Q
    |||||| ||||||||| |||||||||||||||  ||||| |||||||||||||||    
T  17860940 tactttttcaaatatatcccaccttaacctcagtcacgttataaccttgaaaatg 17860886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 8322602 - 8322722
Alignment:
Q  152 ttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagga 250  Q
    |||||||||  |||||||||| |||||  |||||| |||||||| |||| ||| ||||| | || || ||||| | |||||||||| |  | ||||||||    
T  8322602 ttgaatgtccgtttagaattgtttcaaattcatagcaaggtacattcacgtgacgactggaatgaga-aaatgtcgtgaccagcccaactgactttagga 8322700  T
Q  251 ggtacatacgtgtatcttggaa 272  Q
    ||| ||||||||||||||||||    
T  8322701 ggtgcatacgtgtatcttggaa 8322722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 70 - 325
Target Start/End: Original strand, 21471316 - 21471575
Alignment:
Q  70 tactttctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgccttcg---gtgtgtatggtgatatagaccttgaatgtctattta 166  Q
    |||||||  ||||||| || | |||||||| |  ||||| |||||||||||||  |||| |   |||||| || ||||||| || |||||||||||||||    
T  21471316 tactttccaaaatatatcctaacttaaccttagtcacgttataaccttgaaaagtcctttgtatgtgtgtgtgatgatatatacattgaatgtctattta 21471415  T
Q  167 gaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtat 265  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||| || |||||||||||||||||||||| || ||||||||  |||||| |||||    
T  21471416 gaattgcttcaatctcatagcaaggtacaatcacatgacgactggagtatggcaaatgccttgaccagccccattggatttaggagacacatacatgtat 21471515  T
Q  266 cttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatg 325  Q
    ||||||||| ||  |||||||||||||  ||||| |||||||||||| ||  ||||||||    
T  21471516 cttggaattgtacgtggttgaaagtaagagtatcctctctaagtttgatccacttgcatg 21471575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 70 - 309
Target Start/End: Original strand, 5721920 - 5722164
Alignment:
Q  70 tactttctcaaatataccccacctt-aacctcaaccacgtgataaccttgaaaatgcct---tcggtgtgtatggtgatatagaccttgaatgtctattt 165  Q
    |||||||| ||||||| |||||||| ||||| | |||||| |||||||||||||  |||   |  |||||| |||| ||||   ||||||||| ||||||    
T  5721920 tactttctaaaatatatcccacctttaacctaagccacgttataaccttgaaaaaacctctatatgtgtgtctggtaatatgtgccttgaatgcctattt 5722019  T
Q  166 agaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgta 264  Q
    ||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||||||||  |||  ||| |||||  | ||||||||| ||||||||||||    
T  5722020 agaattgcttcaatctcatagcaagatacaatcaaatgactactggagtgtgacaaatttctttcccatccccactgactttaggagatacatacgtgta 5722119  T
Q  265 tcttggaattttatctggttgaaagtaattgtatcttctctaagt 309  Q
    |||||||||| ||  |||||||||| ||  |||||||||||||||    
T  5722120 tcttggaattgtaagtggttgaaagcaagagtatcttctctaagt 5722164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12978520 - 12978455
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12978520 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 12978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18304392 - 18304457
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18304392 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 18304457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 4941581 - 4941643
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941581 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 4941643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10440002 - 10439936
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10440002 cgactttaaaaatacgaataaaatgggcaagaatagagaaaagtggtcaaaatttggggtatgacag 10439936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4952397 - 4952463
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  4952397 cgactttaaaaatacgaataaaatgggtaagaatagataaaagtggtcaaaatttgaggtatgacag 4952463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13831565 - 13831499
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  13831565 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttagggtatgacag 13831499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13839596 - 13839530
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  13839596 cgactttaaaaatacgaataaaatggataagaatagaggaaagtggtcaaaatttggggtatgacag 13839530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 30244839 - 30244775
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  30244839 gactttaaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatttgaggtatgaca 30244775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 7955796 - 7955920
Alignment:
Q  151 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 249  Q
    ||||| ||||| ||| ||||||||| | |||||||  |||||||||||||||||||||| ||||| | ||||||||||||  |||||  | |  ||||||    
T  7955796 cttgagtgtctgtttggaattgctttagtctcataacaaggtacaatcacatgatgactggagtggggcaaatgccttgagaagccctgttgaatttagg 7955895  T
Q  250 aggtacatacgtgtatcttggaatt 274  Q
    ||||||| |||||||||||||||||    
T  7955896 aggtacacacgtgtatcttggaatt 7955920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 21663030 - 21663089
Alignment:
Q  8 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||| || ||| ||||||| |||||||||||||||||||||    
T  21663030 aaaaatacgaataaaatgggtaaaaacagataaaagtgatcaaaatttggggtatgacag 21663089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 30245626 - 30245568
Alignment:
Q  8 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||    
T  30245626 aaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaaatttgggtatgaca 30245568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 30255470 - 30255420
Alignment:
Q  8 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggg 58  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  30255470 aaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatttggg 30255420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 39178521 - 39178567
Alignment:
Q  345 gtctgatataaacatttttaagagttagggagagtttgaaggtgagt 391  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39178521 gtctgatataaacatttttaagggttagggagagtttgaaggtgagt 39178567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 1074076 - 1074229
Alignment:
Q  155 aatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggt 253  Q
    ||||||| |||  ||||||||||||||||||  ||||||||||||||||| | || |||||||  |||||||| ||||   | ||| | |||||||||||    
T  1074076 aatgtctgtttgaaattgcttcaatctcataacaaggtacaatcacatgacgtctggagtgtggaaaatgcctagacctttcacattgactttaggaggt 1074175  T
Q  254 acatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaa 307  Q
    ||||| |||  ||||| ||||  |  || ||||||||||  |||| ||||||||    
T  1074176 acatatgtgcgtcttgtaattggaagtgattgaaagtaagagtatattctctaa 1074229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 16166702 - 16166754
Alignment:
Q  150 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 202  Q
    |||||||||||| |||||||||| |||||| | ||| || |||||||||||||    
T  16166702 ccttgaatgtctgtttagaattgtttcaattttataatatggtacaatcacat 16166754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 327
Target Start/End: Original strand, 17027056 - 17027316
Alignment:
Q  70 tactttctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgccttcg--gtgtgtatggtgatatagaccttgaatgtctatttag 167  Q
    ||||||||||||| || |||||||||||||||| || || |||||||| |||| |||||    |||||| || ||||| | ||||||| ||||| ||||     
T  17027056 tactttctcaaatgtatcccaccttaacctcaatcatgttataacctttaaaaggccttatatgtgtgtgtgatgataaataccttgagtgtctgtttat 17027155  T
Q  168 aattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 266  Q
    |||||||| ||| |||||| |||| |||||||||||| ||||| ||| |||||||||| |||| ||||||||   |||||||||||||||||| ||||||    
T  17027156 aattgcttaaatgtcataggaaggaacaatcacatgacgactggagtatgacaaatgcattgatcagccccactagctttaggaggtacatacatgtatc 17027255  T
Q  267 ttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatgga 327  Q
    |||||||| ||  ||||||||| |||  ||||||||||||| | |||||  ||||||||||    
T  17027256 ttggaattgtacgtggttgaaaataagagtatcttctctaactgtgttccgcttgcatgga 17027316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 335
Target Start/End: Original strand, 24841367 - 24841551
Alignment:
Q  151 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 249  Q
    ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||| |  |||||||    
T  24841367 cttgaatgtttgtttagaattgcttcaatctcatagtaaggtccaatcacatgatgactaaagtgtgacaaatcccttgaccagcccca-cttctttagg 24841465  T
Q  250 aggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 335  Q
     | |||||| ||||||||||||||| ||| |||||||||||||  |||||||| ||||| || |||  ||||||||||| ||||||    
T  24841466 tgatacatatgtgtatcttggaattgtatgtggttgaaagtaagagtatcttccctaagcttcttctacttgcatggaagtggtaa 24841551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 78 - 309
Target Start/End: Original strand, 22754483 - 22754718
Alignment:
Q  78 caaatataccccaccttaacctcaaccacgtgataaccttgaaaatgccttcggtgtgtatgg----tgatatagaccttgaatgtctatttagaattgc 173  Q
    ||||| || ||||||||||||||| |||||| |||||||||||| || | || || ||| ||     |||| || |||||||||| || ||||||||| |    
T  22754483 caaatttatcccaccttaacctcagccacgttataaccttgaaa-tgtcctctgtatgtgtgtgaaatgatgtataccttgaatgcctgtttagaatttc 22754581  T
Q  174 ttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaa 272  Q
    |||||||| |||| ||||||||||||||||| ||||| |||||| ||||||| ||||||| ||| || | ||||||||||||||||||||||||||||||    
T  22754582 ttcaatcttatagcaaggtacaatcacatgacgactggagtgtggcaaatgctttgaccaaccctattgactttaggaggtacatacgtgtatcttggaa 22754681  T
Q  273 ttttatctggttgaaagtaattgtatcttctctaagt 309  Q
    | |||| |||||||||||||   |||| |||||||||    
T  22754682 tattatatggttgaaagtaagaatatcctctctaagt 22754718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 141 - 325
Target Start/End: Complemental strand, 11274871 - 11274687
Alignment:
Q  141 tgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccat 239  Q
    ||||||| ||||||||||| | ||| |||| |||||||| ||||||||||||| ||||||||||  ||| |||||||||||| |||||||||| |||| |    
T  11274871 tgatatataccttgaatgtttgtttggaatcgcttcaatttcatagtaaggtaaaatcacatgacaactagagtgtgacaaacgccttgaccatccccct 11274772  T
Q  240 cggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatg 325  Q
     ||||||||||| ||| || ||||||||||||||| ||| |||||||||||||  |||||||||| |||| |||||  ||||||||    
T  11274771 -ggctttaggagatacctatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcttctcaaagtctgttctgcttgcatg 11274687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24956846 - 24956912
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24956846 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 24956912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24965309 - 24965375
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24965309 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 24965375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1728159 - 1728227
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacagca 69  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1728159 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacagca 1728227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 20372913 - 20372979
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20372913 cgactttaaaaatacgaataaaatcggtaagaatagagaaaagtggtcaaaatttggggtatgacag 20372979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20398635 - 20398700
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20398635 cgactttaaaaatacgaataaaatcggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20398700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29186278 - 29186343
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29186278 cgactttaaaaatacgaataaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 29186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43598046 - 43598111
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43598046 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43598111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43603538 - 43603603
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43603538 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43603603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43609030 - 43609095
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43609030 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43609095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 28852613 - 28852549
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28852613 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacag 28852549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 28844003 - 28843940
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28844003 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 28843940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23350076 - 23350142
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  23350076 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaaatggtcaaaatttggggtatgacag 23350142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19223620 - 19223555
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19223620 cgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 19223555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31421854 - 31421789
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31421854 cgacttcaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaattttgggtatgaca 31421789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 31410953 - 31410890
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  31410953 actttaaaaatacgaataaaatgggttagaatagagaaatgtggtcaaaatttggggtatgaca 31410890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 23125454 - 23125266
Alignment:
Q  149 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 247  Q
    ||||||| ||| | |||||||||| |||||||||| || || ||||||||||||||  ||| ||||||| ||| | ||||||||| |||||    |||||    
T  23125454 accttgagtgtatgtttagaattgtttcaatctcacagcaaagtacaatcacatgacaactggagtgtggcaagttccttgaccaaccccactatcttta 23125355  T
Q  248 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaat-tgtatcttctctaagtttgttcatcttgcatggaaatggtaa 335  Q
     |||||||||| ||||||||||||||| ||  || ||| |||||||  |||||||||||||| |||| |  ||||||||||| ||||||    
T  23125354 tgaggtacatatgtgtatcttggaattgtaagtgattggaagtaataagtatcttctctaagcttgtcccgcttgcatggaagtggtaa 23125266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 292
Target Start/End: Original strand, 19331160 - 19331315
Alignment:
Q  138 tggtgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccc 236  Q
    |||||||||  | ||||||||||| | || |||||||||||||||| || |||||| |||||||||| | || ||||||||||||||| || |||| ||     
T  19331160 tggtgatatgtatcttgaatgtctctatataattgcttcaatctcaaagcaaggtagaatcacatgacggctggagtgtgacaaatgctttcaccaacca 19331259  T
Q  237 catcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaa 292  Q
     |  |  ||||||||||||||| |||||| |||||||| ||  |||||||||||||    
T  19331260 tactgattttaggaggtacatatgtgtattttggaattgtaagtggttgaaagtaa 19331315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 41099780 - 41099838
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatg 63  Q
    ||||||| ||||||  ||||| |||| |||||| |||||||||||||||||||||||||    
T  41099780 tttaaaagtacgaacgaaatgtgtaaaaatagataaaagtggtcaaaatttggggtatg 41099838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 21929285 - 21929236
Alignment:
Q  17 aataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| ||  ||||||| | |||||||||||||||||||||    
T  21929285 aataaaatgggtaaaaagcgagaaaaattgtcaaaatttggggtatgaca 21929236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 70 - 335
Target Start/End: Complemental strand, 16052873 - 16052604
Alignment:
Q  70 tactttctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgcct---tcggtgtgtatggtgatatagaccttgaatgtctattta 166  Q
    |||||||| || |||| | ||||||| |||||  ||||| ||||||||||||| ||||   |   ||||| || |||||||   ||||||||||| |||     
T  16052873 tactttctaaactatatctcaccttatcctcagtcacgttataaccttgaaaaggcctctatttatgtgtgtgatgatatatttcttgaatgtctgtttc 16052774  T
Q  167 gaattgcttcaatctcatagtaaggtacaatcacatgatgactga-gtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtat 265  Q
    |||||||||||||||||||| ||||||||||||||||| || ||| ||||| ||||||||||||||| |||||   ||||||||||||||||||| ||||    
T  16052773 gaattgcttcaatctcatagcaaggtacaatcacatgacgattgaagtgtggcaaatgccttgaccaaccccactagctttaggaggtacatacgcgtat 16052674  T
Q  266 cttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 335  Q
    ||||||||| ||| |||||||||||||   |||  ||| ||||| |||||| ||||||| ||| ||||||    
T  16052673 cttggaattgtatgtggttgaaagtaagaatatactctttaagtctgttcagcttgcatagaagtggtaa 16052604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 131 - 315
Target Start/End: Complemental strand, 28901869 - 28901685
Alignment:
Q  131 gtgtgtatggtgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactga-gtgtgacaaatgccttga 229  Q
    |||||| || ||||||| ||||| || ||||||||||||| ||||||||||| ||| ||| ||||||||||||| |||  | | ||||||||| ||||||    
T  28901869 gtgtgtgtgatgatatataccttaaaagtctatttagaat-gcttcaatctcgtagcaagatacaatcacatgacgacaaacgagtgacaaattccttga 28901771  T
Q  230 ccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttc 315  Q
    ||| |||||  || |||||||| |||||||||||||||||||||| ||| |||||||||||||  |||||||||||||| ||||||    
T  28901770 ccaaccccaatggttttaggagatacatacgtgtatcttggaattgtatgtggttgaaagtaagagtatcttctctaagcttgttc 28901685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17973630 - 17973565
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17973630 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17973565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 289
Target Start/End: Complemental strand, 22895054 - 22894905
Alignment:
Q  141 tgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccat 239  Q
    ||||||| ||| ||||||||| |||||||| ||||||||||||||| |||||||||||| | ||  |||| |||||| ||||||||||||| |||| ||     
T  22895054 tgatatataccctgaatgtctgtttagaatggcttcaatctcatagaaaggtacaatcatacgacaactggagtgtggcaaatgccttgactagcctcac 22894955  T
Q  240 cggctttaggaggtacatacgtgtatcttggaattttatctggttgaaag 289  Q
      |||||||||| ||||||||||| |||||||||| ||| ||||||||||    
T  22894954 tagctttaggagatacatacgtgtgtcttggaattgtatgtggttgaaag 22894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30938347 - 30938282
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30938347 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 30938282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 39837562 - 39837628
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39837562 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacag 39837628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26876054 - 26876119
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876054 cgacattaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 26876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39845605 - 39845670
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39845605 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 39845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 1407075 - 1407138
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1407075 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 1407138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26873604 - 26873670
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26873604 cgacattacaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 26873670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4839782 - 4839847
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  4839782 cgactttaaaaatacgaataaaataggtaagaatagagaaaagcggtcaaaatttggggtatgaca 4839847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25579812 - 25579877
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  25579812 cgactttaaaaatacgaataaaatgggtaagaatagataaaagtggtcaaaatttagggtatgaca 25579877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17664640 - 17664706
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17664640 cgactctaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgacag 17664706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17683796 - 17683861
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  17683796 cgactctaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 17683861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 335
Target Start/End: Original strand, 12755799 - 12755987
Alignment:
Q  148 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgag-tgtgacaaatgccttgaccagccccatcggcttt 246  Q
    |||||||||||||| ||||||||| ||| ||||  |||| ||||||||| || |||| || |||  |||||||||||  ||||||| | |||   |||||    
T  12755799 gaccttgaatgtctgtttagaattcctttaatcctatagcaaggtacaaccatatgacgaatgaaatgtgacaaatgttttgaccaactccactagcttt 12755898  T
Q  247 aggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 335  Q
    | ||| |||||| || |||||||||||| || | ||||||||||||  ||||||||||||||  ||| |  ||||||||||| ||||||    
T  12755899 atgagatacatatgtatatcttggaattgtaaccggttgaaagtaagagtatcttctctaagaatgtcccacttgcatggaagtggtaa 12755987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 24119925 - 24120019
Alignment:
Q  241 ggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 335  Q
    |||||| | ||||||||||||||||||||||||| ||| | ||| |||||||  ||||||||||| ||| |||||  ||||||||||| ||||||    
T  24119925 ggctttggcaggtacatacgtgtatcttggaattatatgtcgtttaaagtaagagtatcttctcttagtctgttctgcttgcatggaagtggtaa 24120019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 6670772 - 6670710
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||  ||||| |||||| |||||||||||||||||||||||||||||    
T  6670772 tttaaaaatacgaataaaatttggtaaaaataga-aaaagtggtcaaaatttggggtatgacag 6670710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 4582265 - 4582203
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||| || ||| |||||| |||| ||||||||||||||||||||||||  ||||||||||    
T  4582265 tttaaaagtatgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttaaggtatgacag 4582203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 5570565 - 5570508
Alignment:
Q  244 tttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatctt 301  Q
    |||||||| || |||||||||||||| |||| ||| |||||||||||||| |||||||    
T  5570565 tttaggagatatatacgtgtatcttgaaattgtatgtggttgaaagtaatagtatctt 5570508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 6663099 - 6663042
Alignment:
Q  9 aaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||  ||||| |||||| ||||||||| ||||||||||||||||||    
T  6663099 aaaatacgaataaaatttggtaaaaataga-aaaagtggttaaaatttggggtatgaca 6663042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 6743501 - 6743444
Alignment:
Q  9 aaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||  ||||| |||||| ||||||||| ||||||||||||||||||    
T  6743501 aaaatacgaataaaatttggtaaaaataga-aaaagtggttaaaatttggggtatgaca 6743444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 28292525 - 28292459
Alignment:
Q  243 ctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 309  Q
    |||||||||||| ||||||||||||| ||||| ||  ||||||||| |||  ||||||||| |||||    
T  28292525 ctttaggaggtagatacgtgtatctttgaattataagtggttgaaattaagagtatcttctttaagt 28292459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 17099875 - 17099990
Alignment:
Q  151 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagg 249  Q
    ||||| ||||| |||||||||| |||||  | |||| |||||||| |||  ||| ||||| |||| ||||||||   |||||||||| |  |||||||||    
T  17099875 cttgattgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtg-gacaaatggtgtgaccagccctactggctttagg 17099973  T
Q  250 aggtacatacgtgtatc 266  Q
    || ||||||||||||||    
T  17099974 agatacatacgtgtatc 17099990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 312
Target Start/End: Original strand, 11520659 - 11520905
Alignment:
Q  70 tactttctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgcct---tcggtgtgtatggtgatatagaccttgaatgtctattta 166  Q
    |||||||  ||||||| |||||||| |||||| |||||| |||||||||||||  |||   |   ||||| |  ||||||| |||||||||||||  |||    
T  11520659 tactttcctaaatatatcccacctttacctcatccacgttataaccttgaaaagtcctctatgtctgtgtgttatgatatataccttgaatgtctgctta 11520758  T
Q  167 gaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtat 265  Q
     ||||||||||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||| ||||   | ||||| || |||||||||||||    
T  11520759 taattgcttcaatctcatagcaaggtacaatcatatgacgactagagtgtggcaaatgccttgaccagtcccactagatttagaagatacatacgtgtat 11520858  T
Q  266 cttggaattttatctggttgaaagtaattgtatcttctctaagtttg 312  Q
    ||| ||||| | | |||||||||||||  |||||  |||||||||||    
T  11520859 ctttgaattgtttgtggttgaaagtaagagtatccactctaagtttg 11520905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50824417 - 50824352
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50824417 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 50824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 50851443 - 50851508
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50851443 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 50851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 17628329 - 17628265
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17628329 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17628265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8154644 - 8154710
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8154644 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacag 8154710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9525434 - 9525500
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9525434 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgacag 9525500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41006621 - 41006555
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41006621 cgactttaaaaatacgaataaaatgggtaagaatagagaaaaatggtcaaaatttggggtatgacag 41006555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41015401 - 41015335
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41015401 cgactttaaaaatacgaataaaatgggtaagaatagagaaaaatggtcaaaatttggggtatgacag 41015335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14538605 - 14538671
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14538605 cgactttaaaaatatgaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgacag 14538671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17933720 - 17933654
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  17933720 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaattggtcaaaatttggggtatgacag 17933654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27341335 - 27341401
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27341335 cgactttaaaaatatgaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgacag 27341401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9555108 - 9555173
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9555108 cgactttaaaaatacgagtaaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 9555173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 2211303 - 2211239
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  2211303 gactttaaaaatacgaataaaataggtaagaatagagaaaagtggtcaaaatttagggtatgaca 2211239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 28470218 - 28470282
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28470218 gactttaaaaatacgaataaaatggataaggatagagaaaagtggtcaaaatttggggtatgaca 28470282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 17919261 - 17919198
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  17919261 ctttaaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatttggggtatgacag 17919198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 291
Target Start/End: Complemental strand, 5633000 - 5632859
Alignment:
Q  151 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagg 249  Q
    ||||||||| | ||||||||||||||||||| || | |||||| ||| |||| | ||||| |||||||||||| ||||||  |   | | || |||||||    
T  5633000 cttgaatgtatgtttagaattgcttcaatctaattgcaaggtataattacattacgactgcagtgtgacaaattccttgattatgtctaccgactttagg 5632901  T
Q  250 aggtacatacgtgtatcttggaattttatctggttgaaagta 291  Q
    ||||||||||||||||||||||||| ||  ||||||||||||    
T  5632900 aggtacatacgtgtatcttggaattgtaagtggttgaaagta 5632859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 16816207 - 16816269
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  16816207 ctttaaaaatacgaataaaatgagtaaaaatagagaaaagtggtcaaaattt-gggtatgacag 16816269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 8197700 - 8197762
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||    
T  8197700 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgacag 8197762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18039068 - 18039011
Alignment:
Q  9 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  18039068 aaaatacgaataaaatgggtaaaaagcgagaaaagtggtcaaaatttggggtatgaca 18039011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 21186809 - 21186747
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||| |||||||||||||| ||| || ||| ||||||||||||||||||||||||||||    
T  21186809 ctttaaaagtacgaataaaatggataaaaacagataaaagtggtcaaaatttggggtatgaca 21186747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 30480 - 30541
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| ||| || |||||| |||| |||||||||||||||||||||||||||||||||||    
T  30480 tttaaaagtacaaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 30541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 18349617 - 18349560
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtat 62  Q
    ||||||| ||||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  18349617 tttaaaagtacgaataaaatgtgtaaaaatagagaaaagttgtcaaaatttggggtat 18349560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 43470556 - 43470615
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatga 64  Q
    |||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||    
T  43470556 ctttaaaaatacgaataaaaagggtaaaaataga-aaaagtagtcaaaatttggggtatga 43470615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 6958978 - 6959006
Alignment:
Q  39 aaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||    
T  6958978 aaaagtggtcaaaatttggggtatgacag 6959006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 8770928 - 8770880
Alignment:
Q  218 caaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 266  Q
    |||||||| |||||||||| |  ||||||||||| ||||||||||||||    
T  8770928 caaatgccgtgaccagccctactggctttaggagatacatacgtgtatc 8770880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 334
Target Start/End: Complemental strand, 1697017 - 1696893
Alignment:
Q  210 gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 309  Q
    ||||||| |||||||||||||||||||||  |||||||| ||||||||| ||||||||||||||| ||| |||||||||||||  ||||| |||||||||    
T  1697017 gagtgtggcaaatgccttgaccagccccactggctttagaaggtacatatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcctctctaagt 1696918  T
Q  310 ttgttcatcttgcatggaaatggta 334  Q
    ||||||  ||||||||||| |||||    
T  1696917 ttgttctgcttgcatggaagtggta 1696893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 52295669 - 52295602
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacagc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52295669 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacagc 52295602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12996541 - 12996475
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12996541 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 12996475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8094282 - 8094348
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8094282 cgactttaaaaatacaaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 8094348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8103088 - 8103153
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8103088 cgactttaaaaatacaaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 8103153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27343691 - 27343756
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27343691 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 27343756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4523680 - 4523745
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  4523680 cgactttaaaaatacgaataaaatggataagaatagaggaaagtggtcaaaatttggggtatgaca 4523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21532304 - 21532369
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  21532304 cgactttaaaaatacgaataaaatggataaggatagagaaaagtggtcaaaatttggggtatgaca 21532369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 12428481 - 12428543
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12428481 ctttaaaaatacgaataaaatgggtagaaatagagaaaagtggtcaaaatttggggtatgaca 12428543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 10638385 - 10638328
Alignment:
Q  9 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10638385 aaaatacgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 10638328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 15787927 - 15787861
Alignment:
Q  138 tggtgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatga 204  Q
    |||| |||||||| || |||||||||||| ||||| ||||||||||||| |||||||||||| ||||    
T  15787927 tggtaatatagactttaaatgtctatttaaaattgattcaatctcatagcaaggtacaatcaaatga 15787861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 33188827 - 33188765
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||| ||||||| || ||| |||||| |||||| ||||||||||||||||||||||    
T  33188827 ctttaaaaatacaaataaaaaggataaaaataga-aaaagttgtcaaaatttggggtatgacag 33188765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 3424381 - 3424331
Alignment:
Q  16 gaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||| |||||| | ||||||||| || ||||||||||||||||||||    
T  3424381 gaataaaaggggtaaaattagagaaaaatgatcaaaatttggggtatgaca 3424331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15944557 - 15944623
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15944557 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 15944623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35138658 - 35138592
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35138658 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 35138592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35146994 - 35146928
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35146994 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 35146928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 41233844 - 41233910
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41233844 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 41233910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14582990 - 14582925
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14582990 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 14582925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15953072 - 15953137
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15953072 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 15953137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17687398 - 17687463
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17687398 cgactttaaaaatatgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17687463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38168357 - 38168422
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38168357 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggagtatgaca 38168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 42565931 - 42565995
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42565931 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacag 42565995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 42574555 - 42574618
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42574555 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 42574618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 20621583 - 20621517
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621583 cgacttcaaaaacacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 20621517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20372313 - 20372378
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  20372313 cgactttaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 20372378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25483666 - 25483601
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25483666 cgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 25483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25491272 - 25491207
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25491272 cgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 25491207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44372770 - 44372705
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  44372770 cgactttaaaaatacgaataaaatgggtaaagatagaaaaaagtggtcaaaatttggggtatgaca 44372705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44388681 - 44388616
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  44388681 cgactttaaaaatacgaataaaatgggtaaagatagaaaaaagtggtcaaaatttggggtatgaca 44388616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 39730111 - 39730217
Alignment:
Q  168 aattgcttcaatctcatagtaaggtacaatcacatgatgac-tgagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 266  Q
    |||||| ||||||||||||||| ||||||||||| |||||| |||||||| ||||| |||||||||| | ||  ||||||||||||||||||| ||||||    
T  39730111 aattgcatcaatctcatagtaatgtacaatcacacgatgacttgagtgtggcaaataccttgaccag-ctcactggctttaggaggtacatacatgtatc 39730209  T
Q  267 ttggaatt 274  Q
    ||| ||||    
T  39730210 ttgaaatt 39730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 22389265 - 22389140
Alignment:
Q  149 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgagtgtgacaaatgccttgaccagccccatcggctttag 248  Q
    ||||||||||| | |||| |||| ||||||| |||||| |||||||| |||||||| ||||| ||||| ||||| |||||||||||| ||    ||||||    
T  22389265 accttgaatgtttgtttataattacttcaatttcatagcaaggtacagtcacatgacgactgggtgtggcaaataccttgaccagcctcactacctttag 22389166  T
Q  249 gaggtacatacgtgtatcttggaatt 274  Q
    ||||||||  | |||| |||||||||    
T  22389165 gaggtacaatcctgtagcttggaatt 22389140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 24292433 - 24292371
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||| |||||| |||||| |||| |||| |||||||||||||||||||||||||||||||    
T  24292433 tttaaaagtacgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgacag 24292371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 24285757 - 24285696
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| |||| ||||||||||||||||||||||||||||||    
T  24285757 tttaaaagtacgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 24285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 34070608 - 34070669
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| |||||||||||||| ||||||||||||||||||||    
T  34070608 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtgatcaaaatttggggtatgaca 34070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 42249459 - 42249520
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| ||||||  ||||| |||| |||||||||||||||||||||||||||||||||||    
T  42249459 tttaaaagtacgaacgaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 42249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 17415588 - 17415496
Alignment:
Q  243 ctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 335  Q
    ||||||||||||||||||||||||||||||||     | |||||||||||  ||||||| |||||||||||||  ||||| ||||| ||||||    
T  17415588 ctttaggaggtacatacgtgtatcttggaattgggaatagttgaaagtaagagtatcttttctaagtttgttccacttgcgtggaagtggtaa 17415496  T

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Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 26903337 - 26903396
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatga 64  Q
    ||||||| |||||| |||||| |||| |||||||||||||||||||||||| ||||||||    
T  26903337 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatga 26903396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 27606647 - 27606709
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||| |||||||||||| | ||| ||||||||||||| |||||||||||| ||||||||    
T  27606647 ctttaaaagtacgaataaaattgataaaaatagagaaaagtagtcaaaatttggagtatgaca 27606709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 28278823 - 28278746
Alignment:
Q  258 acgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 335  Q
    ||||||||||||||||| ||| ||||| |||||||  ||||||||||||| ||||||   ||||||||||| ||||||    
T  28278823 acgtgtatcttggaattctatgtggttaaaagtaagagtatcttctctaactttgtttcgcttgcatggaagtggtaa 28278746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35037921 - 35037884
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35037921 cgactttaaaaatacgaataaaatgggtaagaatagag 35037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 21322814 - 21322875
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||  ||||  |||||| ||||||||||||||||||||||||||||    
T  21322814 tttaaaaatacgaataaaatttggtacaaataga-aaaagtggtcaaaatttggggtatgaca 21322875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 20917570 - 20917520
Alignment:
Q  16 gaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||  ||| |||||||||||||||||||||||| | ||||||||    
T  20917570 gaataaaatgaataaaaatagagaaaagtggtcaaaatttagagtatgaca 20917520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 35303799 - 35303737
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||| |||||| |||||||| |||||| |  |||||||| | |||||||||||||||||||||    
T  35303799 cttttaaaataagaataaaaggggtaaaatcagagaaaaatagtcaaaatttggggtatgaca 35303737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31548588 - 31548522
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31548588 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 31548522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31540019 - 31539954
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31540019 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 31539954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 35104066 - 35104129
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35104066 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35104129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3432890 - 3432956
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3432890 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacag 3432956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29221488 - 29221554
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  29221488 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaagtagtcaaaatttggggtatgacag 29221554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 23223131 - 23223220
Alignment:
Q  141 tgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttga 229  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || | ||||||| ||||||||||||    
T  23223131 tgatatataccttgaatgtctatttagaattgctttaatctcatagcaaggtacaatcacatgacgattggagtgtggcaaatgccttga 23223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32137754 - 32137819
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||    
T  32137754 cgactttaaaaatacgaataaaatggataagaatagagaaaagtgatcaaaatttggggtaagaca 32137819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41746693 - 41746758
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  41746693 cgactttaaaaatatgaataaaatggataagaatagataaaagtggtcaaaatttgggatatgaca 41746758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 44320200 - 44320257
Alignment:
Q  9 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  44320200 aaaatacgaataaaatgggtaaaaagcgagaaaagtggtcaaaatttggggtatgaca 44320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 21498902 - 21498963
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| ||||||  ||||| |||| |||||||||||||||||||||||||||||||||||    
T  21498902 tttaaaagtacgaacgaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 21498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 31313020 - 31313097
Alignment:
Q  150 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgcct 226  Q
    |||||| |||||||||||||||| || |||||||||| |||||||||| |||| | || | ||||||| |||||||||    
T  31313020 ccttgattgtctatttagaattggtttaatctcatagcaaggtacaataacatcacgattggagtgtggcaaatgcct 31313097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28457604 - 28457556
Alignment:
Q  17 aataaaatgggtaagaata-gagaaaagtggtcaaaatttggggtatga 64  Q
    |||||||||||||| || | |||||||||||||||||||||||||||||    
T  28457604 aataaaatgggtaaaaaaacgagaaaagtggtcaaaatttggggtatga 28457556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 51058391 - 51058450
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatga 64  Q
    ||||||||||||||||||||||  || ||| | ||||||||| ||||||||||||||||||    
T  51058391 ctttaaaaatacgaataaaatgaata-gaacaaagaaaagtgatcaaaatttggggtatga 51058450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 21452221 - 21452150
Alignment:
Q  256 atacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatgga 327  Q
    ||||||||||||| ||||| ||| |||||||||||||  ||||| ||||||| |||| ||  ||||||||||    
T  21452221 atacgtgtatctttgaattgtatgtggttgaaagtaagagtatcctctctaaatttgatctgcttgcatgga 21452150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 27754786 - 27754837
Alignment:
Q  151 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 202  Q
    ||||||| ||| |||||||||| |||||| ||||||||| ||||||||||||    
T  27754786 cttgaatttctgtttagaattgtttcaatatcatagtaacgtacaatcacat 27754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 14397286 - 14397356
Alignment:
Q  178 atctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggcttta 247  Q
    ||||||||| ||||||||||||||||| ||| | |||||| ||||| |||||||||| | ||| |||||||    
T  14397286 atctcatagcaaggtacaatcacatgacgacggtagtgtggcaaataccttgaccagtctcattggcttta 14397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 20314058 - 20314092
Alignment:
Q  32 aatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||| ||||||||||||||||||||||||||||    
T  20314058 aatagaaaaaagtggtcaaaatttggggtatgaca 20314092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 31313161 - 31313107
Alignment:
Q  148 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 202  Q
    |||||||| ||||||||||||||||||| |||||||||   ||||||||| ||||    
T  31313161 gaccttgattgtctatttagaattgctttaatctcataaccaggtacaataacat 31313107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 52100078 - 52100017
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| || |||||||| |||||||||||| || |||||||    
T  52100078 tttaaaagtacgaacaaaatgtgtaaaaacagagaaaaatggtcaaaatttaggatatgaca 52100017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35356 - 35421
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35356 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 121293 - 121228
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  121293 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 121228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11058 - 10993
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11058 cgactttaacaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 10993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33100 - 33035
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33100 cgactttaaaaatacgtataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 33035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15878 - 15813
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15878 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 15813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40833 - 40898
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40833 cgactttaaaaatacgaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 40898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 86 - 149
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  86 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 23522 - 23463
Alignment:
Q  8 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23522 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 23463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 932 - 995
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  932 ctttaaaaatacgaataaaatgggtaagaatagagaaagctggtcaaaatttggggtatgacag 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 201 - 139
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  201 ctttaaaaatacgaataaaatgggtagaaatagagaaaagtggtcaaaatttggggtatgaca 139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4455 - 4390
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||    
T  4455 cgactttaaaaatatgaataaaatgggtaagaatagagaaaaaatgtcaaaatttggggtatgaca 4390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 7648 - 7694
Alignment:
Q  20 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7648 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 7694  T

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Target: scaffold0991 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 377 - 438
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||||||    
T  377 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 438  T

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Target: scaffold0015 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 192589 - 192526
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacagc 68  Q
    ||||||| |||||| |||||  |||| |||||||||||||||||||||||||||||||||||||    
T  192589 tttaaaagtacgaacaaaatctgtaaaaatagagaaaagtggtcaaaatttggggtatgacagc 192526  T

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Target: scaffold0863 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 376 - 438
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||| |||||| |||||| |||| |||| |||||||||||||||||||||||||||||||    
T  376 tttaaaagtacgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgacag 438  T

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Target: scaffold0170 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 7193 - 7255
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||| ||| |||||||||||||| || ||||||||||||||||||||| ||||||||||    
T  7193 ctttaaaagtacaaataaaatgggtaaaaacagagaaaagtggtcaaaatttagggtatgaca 7255  T

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Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 81790 - 81852
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||| |||||| |||||| |||| |||||||||||||||||||||||| |||||||||||    
T  81790 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatgacag 81852  T

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Target: scaffold0044; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 65542 - 65604
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||| |||||| |||||| |||| ||||||||||||||  ||||||||||||||||||||    
T  65542 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtgtacaaaatttggggtatgacag 65604  T

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Target: scaffold1487 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 762 - 801
Alignment:
Q  20 aaaatgggtaagaatagagaaaagtggtcaaaatttgggg 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  762 aaaatgggtaagaatagagaaaagtggtcaaaatttgggg 801  T

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Target: scaffold0990 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 3134 - 3237
Alignment:
Q  211 agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtt 310  Q
    ||||||||||||||||||||||  ||||   |  ||||||| |||||| |||||||||| |||| ||| |||||||||||||  ||||| | ||||||||    
T  3134 agtgtgacaaatgccttgaccaatcccactagtcttaggagatacatatgtgtatcttgaaattgtatgtggttgaaagtaagagtatcctttctaagtt 3233  T
Q  311 tgtt 314  Q
    ||||    
T  3234 tgtt 3237  T

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Target: scaffold0990; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 3075 - 3127
Alignment:
Q  131 gtgtgtatggtgatatagaccttgaatgtctatttagaattgcttcaatctca 183  Q
    |||||| || ||||||| ||||| |||||||||||| ||||||||||||||||    
T  3075 gtgtgtgtgatgatatataccttcaatgtctatttataattgcttcaatctca 3127  T

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Target: scaffold0514 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 10912 - 10974
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||  ||||| |||||| |||||||||||||||||||||||||||||    
T  10912 tttaaaaatacgaataaaatttggtaaaaataga-aaaagtggtcaaaatttggggtatgacag 10974  T

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Target: scaffold1026 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 304
Target Start/End: Complemental strand, 2323 - 2186
Alignment:
Q  168 aattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 266  Q
    |||| ||||||| |||||| || |||||||||||||| |||| ||||||| ||||| || | |||| |  ||  ||||||||||||||||||| ||| ||    
T  2323 aattacttcaatttcatagcaaagtacaatcacatgacgacttgagtgtggcaaataccgtaaccatctgcactggctttaggaggtacatacatgtgtc 2224  T
Q  267 ttggaattttatctggttgaaagtaattgtatcttctc 304  Q
    ||| | || ||  |||||||||||||  ||||||||||    
T  2223 ttgaatttgtacgtggttgaaagtaagagtatcttctc 2186  T

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Target: scaffold0389 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 477 - 415
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||| |||||| |||||| |||| | || ||||||||||||||||||| |||||||||||    
T  477 tttaaaagtacgaacaaaatgtgtaaaattaaagaaaagtggtcaaaatttagggtatgacag 415  T

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Target: scaffold0222 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 20485 - 20547
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||| |||||| |||||| |||| |  | ||||||||||||||||||||||||||||||    
T  20485 ctttaaaagtacgaacaaaatgtgtaaaaccatagaaaagtggtcaaaatttggggtatgaca 20547  T

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Target: scaffold0484 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 11457 - 11507
Alignment:
Q  17 aataaaatgggtaagaatag-agaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||| | |||| |||||||||||||||||| ||||    
T  11457 aataaaatgggtaagaatagaaaaaaaatggtcaaaatttggggtacgaca 11507  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 65710 - 65744
Alignment:
Q  33 atagagaaaagtggtcaaaatttggggtatgacag 67  Q
    ||||||||||||||||||||||| |||||||||||    
T  65710 atagagaaaagtggtcaaaatttagggtatgacag 65744  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 61347 - 61288
Alignment:
Q  8 aaaaatacgaataaaa-tgggtaagaa-tagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||| || |||| || |||||||| ||||||||||||||||||||||||    
T  61347 aaaaatacgaataaaaatgagtaaaaaatagagaaa-gtggtcaaaatttggggtatgaca 61288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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