View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_53 (Length: 377)
Name: NF8888_low_53
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 37019880 - 37020224
Alignment:
| Q |
18 |
atcacgggataccagatgagtcatccccagatgaggtcttattgttcgaaaatgtgaacaacttcatacctttaaatgaaattggccttggagcagttct |
117 |
Q |
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| T |
37019880 |
atcacgggataccagatgagtcatccccagaagaggtcttattgttcgaaaatgtgaacaacttcataccttcaaatgaaattggccttggagcagttct |
37019979 |
T |
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| Q |
118 |
tcttaaaccagacggttcttctatgtagaagggataatatatatccttcattaataaattatgaacttgaatgtcttgtgaatcctgtgttctctaaatg |
217 |
Q |
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| T |
37019980 |
tcttaaatcagacggttcttctatatagaaaggataatatatttccttcattaataaattatgaacttgaatgtcttgtgaatcctgtgttctctaaatg |
37020079 |
T |
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| Q |
218 |
tagcttggagatatannnnnnnaaataatttgggcctcttaaatttcattacttattt--tgaccttgttaggagatgcttatgtccgtcttatgtttta |
315 |
Q |
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| T |
37020080 |
tagtttggagatatattttttaaaataatttgggcctcttaaatttcattacttattttatgaccttgttaggagatgcttatgtccgtcttatgtttta |
37020179 |
T |
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| Q |
316 |
taaagtgatttgaatcaattttcaaatgtatgattcaataattgc |
360 |
Q |
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| T |
37020180 |
taaagtgatttgaatcaattttcaaatgtatgattcaataattgc |
37020224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 37041808 - 37041991
Alignment:
| Q |
18 |
atcacgggataccagatgagtcatccccagatgaggtcttattgttcgaaaatgtgaacaacttcatacctttaaatgaaattggccttggagcagttct |
117 |
Q |
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| T |
37041808 |
atcacgagataccagatgagtcatctccagaagaggtcttattgttcgaaaatatgaacaacttcataccttcaaatgaaattggccttggagcagttct |
37041907 |
T |
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| Q |
118 |
tcttaaaccagacggttcttctatgtagaagggataatatatatccttcattaataaattatgaacttgaatgtcttgtgaatc |
201 |
Q |
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| T |
37041908 |
tcttaaaccagacggttcttttatgtagaagggataatatatatccttcattaataaataatgaacttgcatgttttgtgaatc |
37041991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 37024831 - 37024978
Alignment:
| Q |
18 |
atcacgggataccagatgagtcatccccagatgaggtcttattgttcgaaaatgtgaacaacttcatacctttaaatgaaattggccttggagcagttct |
117 |
Q |
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|||||| ||||||| | |||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
37024831 |
atcacgagataccaaacgagtcatccccagaagaggccttattgtttaaaaatgtgaacaacttcataccttcaaatgaaattggccttggaatagttct |
37024930 |
T |
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| Q |
118 |
tcttaaaccagacggttcttc----tatgtagaagggataatatatat |
161 |
Q |
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| T |
37024931 |
tcttaaaccagacggttcttctatatatgtagaagggataatatatat |
37024978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 37025946 - 37026007
Alignment:
| Q |
281 |
ttgttaggagatgcttatgtccgtcttatgttttataaagtgatttgaatcaattttcaaat |
342 |
Q |
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| T |
37025946 |
ttgttagaagttgcttctctccgtcttatgttttatcaggtgttttgaatcaattttcaaat |
37026007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 37042080 - 37042145
Alignment:
| Q |
277 |
gaccttgttaggagatgcttatgtccgtcttatgttttataaagtgatttgaatcaattttcaaat |
342 |
Q |
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| T |
37042080 |
gactttgttagaagttgcttctctccgtcttatgttttatcaggtgttttgaatcaattttcaaat |
37042145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 9978828 - 9978924
Alignment:
| Q |
33 |
atgagtcatccccagatgaggtcttattgttcgaaaatgtgaacaacttcatacctttaaatgaaattggccttggagcagttcttcttaaaccaga |
129 |
Q |
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|||||||||| ||||| ||||| |||||||| | ||| |||||||||||||||| |||||||||||||||||||| | |||||||||||||| |
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| T |
9978828 |
atgagtcatcaccagaagaggttttattgtttcataatacgaacaacttcatacctgaaaatgaaattggccttggaggcatccttcttaaaccaga |
9978924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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