View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_59 (Length: 362)
Name: NF8888_low_59
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 5287168 - 5287500
Alignment:
| Q |
8 |
aagcagaggcaatagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
107 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5287168 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagta---ctctttaatattcttcttatgt |
5287264 |
T |
|
| Q |
108 |
agataacttttgagaattgattgagttttgttgcatgtatt-gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccttcat |
205 |
Q |
| |
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| T |
5287265 |
aaataacttatgagaattga----gttttcttgcatgtatttgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcat |
5287360 |
T |
|
| Q |
206 |
taatattttattaaataatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaattgcatggccgtgtctac |
305 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| || |
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| T |
5287361 |
taatattttattaattaatgaaccattctttaacaactacatgtatacttgatctccaaaccgaagtcaagaccatatttaattgcattaccgtgttcac |
5287460 |
T |
|
| Q |
306 |
ttgacattgaatttacaacctattctcgtaatggtaattt |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5287461 |
ttgacattgaatttacaacctattctcgtaatggtaattt |
5287500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 5279160 - 5279514
Alignment:
| Q |
8 |
aagcagaggcaatagaggatgccaaagccaagatgctaacaaggaagtatataatcttcatttt-gcaactcagtattactctttaatattcttcttatg |
106 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
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| T |
5279160 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcatttttgtaactcagtactactctttaatattcttcttatg |
5279259 |
T |
|
| Q |
107 |
tagataacttttgagaattgattgagttttgttgcatgtattgcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccttcat |
205 |
Q |
| |
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|| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||| |||| |
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| T |
5279260 |
taaataacttgtgagaga--attgagttttgttgcatgtattgcttgctatttataacaatgaaacattgaagtggtttgcatttgatatttaccgtcat |
5279357 |
T |
|
| Q |
206 |
taatatttt----------------attaaataatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaatt |
289 |
Q |
| |
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|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5279358 |
tagtttttttttttttttttttcatattaaataatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaatt |
5279457 |
T |
|
| Q |
290 |
gcatggccgtgtctacttgacattgaatttacaacctattctcgtaatggtaatttt |
346 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5279458 |
gcatggccgtgtccacttgacattgaatttacaacctattctcgtaatggtaatttt |
5279514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 5281927 - 5281650
Alignment:
| Q |
8 |
aagcagaggcaatagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
5281927 |
aagcaaaggcaatagaggatgccaaagccaagatgctaactaggaggtataaaatcttcattttgcaactcagtactaccctttaatattcttcttatgt |
5281828 |
T |
|
| Q |
108 |
agataacttttgagaattgattgagttttgttgcatgtattgcttgctatttataagcacgaaa-attgaagt-ggtttgcatttgatctttaccttcat |
205 |
Q |
| |
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| |||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||| ||||| || |||||||||||| ||||| |||| |
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| T |
5281827 |
aaataacttttgagaa----ttgagttttgttgcatatattgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttactgtcat |
5281732 |
T |
|
| Q |
206 |
taatattttattaaataatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaa |
287 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
5281731 |
tagttttttattaaataatgaaccattctttaacaactacatgtttgcttgatctccaaaccaaagtcaagaccatttttaa |
5281650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 20358561 - 20358895
Alignment:
| Q |
8 |
aagcagaggcaatagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
107 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20358561 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagta---ctctttaatattcttcttatgt |
20358657 |
T |
|
| Q |
108 |
agataacttttgagaattgattgagttttgttgcatgtatt-gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccttcat |
205 |
Q |
| |
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| ||||||| |||||||||| ||||| ||||||||||| |||||||||||||| | | |||| ||| ||| |||||||||||||||||||| |||| |
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|
| T |
20358658 |
aaataacttatgagaattga----gttttcttgcatgtatttgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcat |
20358753 |
T |
|
| Q |
206 |
taatattttattaaataatgaaccattctttaacaactacatgtatacttgatct--ccaaaccaaagtcaagaccatttttaattgcatggccgtgtct |
303 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| |
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| T |
20358754 |
taatattttattaattaatgaaccattctttaacaactacatgtatacttgatctccccaaaccaaagtcaagaccatatttaattgcattaccgtgttc |
20358853 |
T |
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| Q |
304 |
acttgacattgaatttacaacctattctcgtaatggtaattt |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20358854 |
acttgacattgaatttacaacctattctcgtaatggtaattt |
20358895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 20353324 - 20353048
Alignment:
| Q |
8 |
aagcagaggcaatagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
107 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
20353324 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcag---cactctttaatattcttcttatgt |
20353228 |
T |
|
| Q |
108 |
agat-aacttttgagaattgattgagttttgttgcatgta-ttgcttgctatttataagcacgaaa-attgaagt-ggtttgcatttgatctttaccttc |
203 |
Q |
| |
|
| || ||||| ||||| |||||||||||||||||||| |||||||||||||||||| | |||| ||||| || |||||||||||| |||||| || |
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|
| T |
20353227 |
aaataaacttgtgaga----attgagttttgttgcatgtatttgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttaccgtc |
20353132 |
T |
|
| Q |
204 |
attaatattttattaaataatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaa |
287 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
20353131 |
attagttttttattaaataatgaaccattctttaacaactacatgtttgcttgatctccaaaccaaagtcaagaccatttttaa |
20353048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 6236147 - 6236423
Alignment:
| Q |
8 |
aagcagaggcaatagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
107 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6236147 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatagaatcttcattttgcaactcagtactactctttaatattcttcttatgt |
6236246 |
T |
|
| Q |
108 |
agataacttttgagaattgattgagttttgttgcatgtattgcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccttcatt |
206 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||| ||||| |
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|
| T |
6236247 |
aaataaccggtgaga----attgagttttgttgcatgtattgcttgctatttataagaatgaaacattgaagtggtttgcatttgatatttaccgtcatt |
6236342 |
T |
|
| Q |
207 |
aatattttattaaataatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaa |
287 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||||||| |
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|
| T |
6236343 |
agttttttattaaataatgaaccattctttaacaactacatgtgtacttgatctccatactaaagtcaaaaccatttttaa |
6236423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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