View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_67 (Length: 344)

Name: NF8888_low_67
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_67
NF8888_low_67
[»] chr4 (1 HSPs)
chr4 (16-326)||(25793400-25793710)
[»] chr3 (5 HSPs)
chr3 (18-128)||(10377945-10378055)
chr3 (19-127)||(10075174-10075282)
chr3 (19-127)||(10134094-10134202)
chr3 (19-127)||(10136729-10136837)
chr3 (47-104)||(10365502-10365559)
[»] scaffold0045 (1 HSPs)
scaffold0045 (61-127)||(85807-85873)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 25793710 - 25793400
Alignment:
Q  16 acatcatgaggtgtgttgctgatgaacaatccatacaagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattca 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793710 acatcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattca 25793611  T
Q  116 tacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccgtatcatgatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  25793610 tacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccatctcatgatt 25793511  T
Q  216 ttgaaggactgcaagttactaaattttcggccgtttcaagaaactctataatannnnnnngttcctagtggtcagattatgtatgaaaaatgataaattt 315  Q
    | |||||||||||||||||||||||||||||| |||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||    
T  25793510 tggaaggactgcaagttactaaattttcggccatttcaagaaactctttaatatttttttgttcctagtggtcagattatgtatgaaaaatgataaattt 25793411  T
Q  316 accaattgctt 326  Q
    |||||||||||    
T  25793410 accaattgctt 25793400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 10377945 - 10378055
Alignment:
Q  18 atcatgaggtgtgttgctgatgaacaatccatacaagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcata 117  Q
    |||||||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||  | |||||||     
T  10377945 atcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggattcatt 10378044  T
Q  118 cattttattga 128  Q
     ||||||||||    
T  10378045 tattttattga 10378055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 10075282 - 10075174
Alignment:
Q  19 tcatgaggtgtgttgctgatgaacaatccatacaagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac 118  Q
    ||||||||| |||||||||| ||||||||||| || |||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  10075282 tcatgaggtatgttgctgataaacaatccatataaacccattataaaaatcaacataacagtaccagcaagataaacatctgcagcagcaagattcattt 10075183  T
Q  119 attttattg 127  Q
    |||||||||    
T  10075182 attttattg 10075174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 10134202 - 10134094
Alignment:
Q  19 tcatgaggtgtgttgctgatgaacaatccatacaagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac 118  Q
    |||||||||||||||||||| ||||||||||| |||  ||| || |||||||||||||  |||||||||||||||||||||||||||  |||| ||||      
T  10134202 tcatgaggtgtgttgctgataaacaatccataaaagaacattccgaaaatcaacataatggtaccagcaagataaacatctgcagcaacaagactcattt 10134103  T
Q  119 attttattg 127  Q
    |||||||||    
T  10134102 attttattg 10134094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 10136837 - 10136729
Alignment:
Q  19 tcatgaggtgtgttgctgatgaacaatccatacaagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac 118  Q
    |||||||| | |||| |||| ||||||||||| |  | ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||      
T  10136837 tcatgaggcgcgttggtgataaacaatccatatatacgcattccaaaaatcaacataacggtaccagcaagataaacatctgcagcagcaagattcattt 10136738  T
Q  119 attttattg 127  Q
    |||||||||    
T  10136737 attttattg 10136729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 10365502 - 10365559
Alignment:
Q  47 catacaagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagc 104  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10365502 catataagcccataccaaaaatcaacataacagtaccagcaagataaacatctgcagc 10365559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 85873 - 85807
Alignment:
Q  61 ccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattttattg 127  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||  |||||||||    
T  85873 ccaaaaatcaacataacggtaccagcaagataaacatttgcagcagcaagattcatttattttattg 85807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University