View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_68 (Length: 344)
Name: NF8888_low_68
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 15161050 - 15161376
Alignment:
| Q |
1 |
caaaataagcttgacattaaacaacttattggaagcaccttgtttatgcctctgaacaaactacattgtcaaaaagtaaattgcaaatattttgttgtat |
100 |
Q |
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| T |
15161050 |
caaaataagcttgacattaaacaacttatgggaagcaccatgtttatgcctctgaacaaactacattgtcaaaaagtaaattgcaaatattt-gttgtat |
15161148 |
T |
|
| Q |
101 |
ataagaataagaccatacaattccatcctcctatacttcaggaacaatcttcccagcgccagtatgtatgcggtgaaactgcacctagtcaacatatcat |
200 |
Q |
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| T |
15161149 |
ata-gaataagaccatacaattccatcctcctagacttcaggaacaatcttcccagcaccagtatgtatgcggtgaaactgcacctagtcaacatatcat |
15161247 |
T |
|
| Q |
201 |
attagtaacaaactactagttaacaaaatctataaaaagcaaaaagacaatcaataccacttgaattccacatcaatacaaaaaggagaacctatagttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15161248 |
attagtaacaaactactagttaacaaaatctataaaaaccaaaaagacaatcaataccacttgaattccacatcaatacaaaaaggagaacctatagttt |
15161347 |
T |
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| Q |
301 |
ctgaatcaaatagatagaactattgttag |
329 |
Q |
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| T |
15161348 |
ctgaatcaaatagatagaactattgttag |
15161376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 40250097 - 40250209
Alignment:
| Q |
68 |
gtcaaaaagtaaattgcaaatattttgttgtatataagaataagaccatacaattccatcctcctatacttcaggaacaatcttcccagcgccagtatgt |
167 |
Q |
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| T |
40250097 |
gtcaaaaagtaaattgcaaatattt-gctgcatataagaataagaacatacatttccatcccccaagacttcaggaacaatcttcccagcaccagtgtgt |
40250195 |
T |
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| Q |
168 |
atgcggtgaaactgca |
183 |
Q |
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| T |
40250196 |
at--ggtgaaactgca |
40250209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 37727630 - 37727703
Alignment:
| Q |
259 |
acttgaattccacatcaatacaaaaaggagaacctatagtttc---tgaatcaaatagatagaactattgttag |
329 |
Q |
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||||||||||||| ||||||||||||||| | || |||||||| |||||| |||| ||| |||||||||||| |
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| T |
37727630 |
acttgaattccacgtcaatacaaaaaggaaagcccatagtttctgatgaatcgaatacatataactattgttag |
37727703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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