View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8888_low_7 (Length: 798)
Name: NF8888_low_7
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 363 - 719
Target Start/End: Complemental strand, 34678170 - 34677814
Alignment:
| Q |
363 |
cgctgtgagcatttagctctctctactgtttcactctcagattataaacaaaagagtacatcacatgaatgttcatatacaagactcatcaaatcatcgt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34678170 |
cgctgtgagcatttagctctctctactgtttcactctcagattataaacaaaagagtacatcacatgaatgttcatatacaagagtcatcaaatcatcgt |
34678071 |
T |
|
| Q |
463 |
agaaaataaggattatttcatgatgtgatcgatgattcaattgcacacaagttaaacagtttaacttgaagattcataagtcataacactacgtatagtt |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34678070 |
agaaaataaggattatttcatgatgtgatcgatgattcaattgcacacaagttaaacagtttaacttgaagattcataagtcataacactacgtatagtt |
34677971 |
T |
|
| Q |
563 |
ccatctagaataatcaaaataacggcttagctttttgttgttctgttttcatgaaaatgaaaggctaacttcactgttagtattttctcttctggaaaca |
662 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677970 |
ccacctagaataatcaaaataacggcttagctttttgttgttctgttttcatgaaaatgaaaggctaacttcactgttagtattttctcttctggaaaca |
34677871 |
T |
|
| Q |
663 |
tggagagcaaatgcagctgaacatgtagcttagaaaacactgctatagtttcttcta |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34677870 |
tggagagcaaatgcagctgaacatgtagcttagaaaactctgctatagtttcttcta |
34677814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 34678513 - 34678237
Alignment:
| Q |
17 |
aatattgtgagattaccttaagcttaaccataaattctaagagaatataagtctaatttctttgtcaattggaccaacatctcattcgtgaggacgagta |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34678513 |
aatattgtgagattaccttaagcctaaccataaattctaagagaatataagtctaatttctttatcaattggaccaacatctcattcgtgaggacgagta |
34678414 |
T |
|
| Q |
117 |
atataacaaattctcttatcgaaaacatcaccggtcactacttttacattttaaaattattttcaaatattga----nnnnnnnagggaaatgtcatata |
212 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34678413 |
atataacaacttctcttatcagaaacatcaccagtcactacttttacattttaaaattattttcaaatattgatttttttttttagggaaatgtcatata |
34678314 |
T |
|
| Q |
213 |
ttgattgatatcatagaccatggaacatactgtgatgatctggatttgttaattatgtgtgtaaacagtgtatgtgg |
289 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34678313 |
ttgattgatataatagaccatggaacatactgtgatgatctggatttgttaattatgtgtgtaaacagtgtatgtgg |
34678237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 742 - 787
Target Start/End: Complemental strand, 34677780 - 34677735
Alignment:
| Q |
742 |
attctaatcatagataaaacaaccctaactctcctattagtattat |
787 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677780 |
attctaatcatagataaaacaaccctaactctcctattagtattat |
34677735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University