View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_71 (Length: 325)
Name: NF8888_low_71
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 48753422 - 48753718
Alignment:
| Q |
11 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagacctt |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753422 |
aagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagacctt |
48753521 |
T |
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| Q |
111 |
ttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcg |
210 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753522 |
ttaattggattggaccgagaatggatttcattcctagtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcg |
48753621 |
T |
|
| Q |
211 |
aggagagccgttgaagcttgtggatggtggtgagtctcagaggacttttctttatatcaaagatgctattgaagcagtgttgttgatgattgaaaac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753622 |
aggagagccgttgaagcttgtggatggtggtgagtctcagaggacttatctttatatcaaagatgctattgaagcagtgttgttgatgattgaaaac |
48753718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 49052057 - 49052353
Alignment:
| Q |
11 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagacctt |
110 |
Q |
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||||| |||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||| |
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| T |
49052057 |
aagcaaagatggtcgtatgcatgtgcgaagcagttgattgaaaggttgatttatggtgaaggtgatgaaaaggggttggagtttacaattgtgaggcctt |
49052156 |
T |
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| Q |
111 |
ttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcg |
210 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49052157 |
ttaattggattgacccgagaatggatttcattcctggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcg |
49052256 |
T |
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| Q |
211 |
aggagagccgttgaagcttgtggatggtggtgagtctcagaggacttttctttatatcaaagatgctattgaagcagtgttgttgatgattgaaaac |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49052257 |
tggagagccgttgaagcttgtagatggtggtgagtctcagaggacttttctttatatcaaagatgctattgaggcagtgttgttgatgattgaaaac |
49052353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 18136633 - 18136426
Alignment:
| Q |
18 |
gatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattg |
117 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18136633 |
gatggtcatatgcatgtgcaaagcaattgattgagaggttgatttatggtgaaggtgatgaaaatgggttggagtttacaattgtgagaccttttaattg |
18136534 |
T |
|
| Q |
118 |
gattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcgaggagag |
217 |
Q |
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||||||||| ||||||||| || ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18136533 |
gattggaccaagaatggatctcgttcctagtgttgatggtccaagtgagagagttcctagggttcttgcttgcttcagcaacaatcttcttcgtggagag |
18136434 |
T |
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| Q |
218 |
ccgttgaa |
225 |
Q |
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|||||||| |
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| T |
18136433 |
ccgttgaa |
18136426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 20488858 - 20488756
Alignment:
| Q |
200 |
aatcttcttcgaggagagccgttgaagcttgtggatggtggtgagtctcagaggacttttctttatatcaaagatgctattgaagcagtgttgttgatga |
299 |
Q |
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||||||||| |||||||||| | |||||||||||||||||||| || ||||| || ||| |||| |||||||||||||||||||| || || ||||||| |
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| T |
20488858 |
aatcttcttagaggagagcccctcaagcttgtggatggtggtgaatcccagagaacatttgtttacatcaaagatgctattgaagctgtcttattgatga |
20488759 |
T |
|
| Q |
300 |
ttg |
302 |
Q |
| |
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||| |
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| T |
20488758 |
ttg |
20488756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 20489087 - 20488960
Alignment:
| Q |
71 |
ggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggag |
170 |
Q |
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|||| |||||| || ||||| || ||||||||||| || ||||||||||| ||||| |||||||| ||||||| ||| |||| || ||||||||||| | |
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| T |
20489087 |
ggtgctgaaaacggcttggagttcacaattgtgaggccctttaattggatcggacctagaatggacttcattcccggtattgacggaccaagtgagggtg |
20488988 |
T |
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| Q |
171 |
ttcctagggttcttgcttgcttcagcaa |
198 |
Q |
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|
|||| | |||||||| ||||||||||| |
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| T |
20488987 |
ttccccgtgttcttgcatgcttcagcaa |
20488960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 19389507 - 19389604
Alignment:
| Q |
98 |
attgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcag |
195 |
Q |
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||||||||||||| ||| ||||||||||| |||||||| ||||||| ||| || |||||||||||||| || || || || ||| | ||||||||||| |
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| T |
19389507 |
attgtgagaccttataactggattggaccaagaatggacttcattcctggagtggatggtccaagtgatggtgtcccaagagttttagcttgcttcag |
19389604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 20489236 - 20489181
Alignment:
| Q |
11 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatgg |
66 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||| || ||||||| |
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| T |
20489236 |
aagcagagatggtcatatgcatgtgcaaagcagttgattgagaggctggtttatgg |
20489181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 15565689 - 15565604
Alignment:
| Q |
11 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttac |
96 |
Q |
| |
|
|||||||||||||| ||| ||||||| | || |||||||| ||||||||||| | ||||||| ||||||| ||||||| ||||| |
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| T |
15565689 |
aagcagagatggtcgtatccatgtgcatatcagttgattgaaaggttgatttacgatgaaggtgctgaaaataggttggagtttac |
15565604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 15578336 - 15578251
Alignment:
| Q |
11 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttac |
96 |
Q |
| |
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|||||||||||||| ||| ||||||| | || |||||||| ||||||||||| | ||||||| ||||||| ||||||| ||||| |
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| T |
15578336 |
aagcagagatggtcgtatccatgtgcatatcagttgattgaaaggttgatttacgatgaaggtgctgaaaataggttggagtttac |
15578251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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