View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_73 (Length: 316)

Name: NF8888_low_73
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_73
NF8888_low_73
[»] chr4 (5 HSPs)
chr4 (15-316)||(48912107-48912408)
chr4 (19-305)||(48958264-48958550)
chr4 (12-316)||(48965442-48965743)
chr4 (19-173)||(48961413-48961567)
chr4 (67-194)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (19-302)||(6287-6570)
scaffold0536 (15-316)||(10257-10556)
[»] chr6 (2 HSPs)
chr6 (19-305)||(12589942-12590231)
chr6 (65-305)||(12483237-12483477)
[»] chr2 (3 HSPs)
chr2 (65-252)||(13440363-13440550)
chr2 (15-214)||(13448479-13448675)
chr2 (68-155)||(13455000-13455087)
[»] chr7 (1 HSPs)
chr7 (51-274)||(3417334-3417557)
[»] chr5 (2 HSPs)
chr5 (51-252)||(28385483-28385684)
chr5 (65-257)||(12540848-12541040)
[»] chr8 (1 HSPs)
chr8 (65-206)||(12641353-12641494)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 48912408 - 48912107
Alignment:
Q  15 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912408 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 48912309  T
Q  115 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 214  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912308 tcattctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 48912209  T
Q  215 gacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctct 314  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912208 gacattggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctct 48912109  T
Q  315 ct 316  Q
    ||    
T  48912108 ct 48912107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 48958264 - 48958550
Alignment:
Q  19 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 118  Q
    ||||| ||||| ||| |||| |||| | | ||||||||||| ||  |||||||||| || || || |||||||| ||| |||||||||||||| | || |    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgt 48958363  T
Q  119 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgaca 218  Q
      ||  ||| |||||| ||||||||||||||||  ||||||||||  |||||||| ||||| |||||||||||||||||||||||||| || |||| |||    
T  48958364 cttctttccctttcttctcaggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataaca 48958463  T
Q  219 tcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctc 305  Q
    |  |||||||||||||||||||| ||| ||||||| |   ||| |||| |||||||||| |||  | |||||||| |||||| ||||    
T  48958464 tatgcttccaaagcatatgtacaacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaacattctc 48958550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 48965442 - 48965743
Alignment:
Q  12 cagaacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttca 111  Q
    ||||||||| |||||||||||| ||||||||| | |||||||   ||| ||  |||||||||| || |||||||| ||||| ||||  ||||||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctt---tccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttca 48965538  T
Q  112 ttgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaa 211  Q
     | |||| |||  |||  || ||    |||| ||||||||| || || |||| ||||||||| ||  | ||||||||||||||||| |||||||||  |     
T  48965539 ctctcatcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgat 48965638  T
Q  212 aatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcc 311  Q
    || ||||  |||||||||||| |||||||| ||| ||||||| | | || || || ||||||||||||||||| ||||| |||||  ||||||||| |||    
T  48965639 aacgacagaggcttccaaagcttatgtacaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcc 48965738  T
Q  312 tctct 316  Q
     ||||    
T  48965739 cctct 48965743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 48961413 - 48961567
Alignment:
Q  19 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 118  Q
    ||||| ||||| |||||||| |||| | ||||||||||| | ||  ||||||||||||| || || |||||||| || ||||||||||||||  | ||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcat 48961512  T
Q  119 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttc 173  Q
     | |  ||| ||| || ||||||||||||||||  |||||||||| |||||||||    
T  48961513 ccactttcccttttttctcaggaacaacccatacaaattcgtgacccgatgcttc 48961567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 48951399 - 48951526
Alignment:
Q  67 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 166  Q
    |||||||||||| || | || ||||||||||| |||||||| ||| | || | |||| |||  |||||||| || ||||||||||||||||| | ||  |    
T  48951399 ctctcttcaaactccctgggtaaccatttttccttctcctcatcactctcgttctccttccccttcttttctgggacaacccatatgaattcataacctg 48951498  T
Q  167 atgcttcaatcccgcacgcaatctcata 194  Q
    || |||| ||| |||  |||||||||||    
T  48951499 attcttctatcgcgcttgcaatctcata 48951526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 6570 - 6287
Alignment:
Q  19 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 118  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||| | ||||    
T  6570 tgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcat 6471  T
Q  119 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgaca 218  Q
      ||  ||| |||||| |||||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | ||    
T  6470 cttctttccctttcttctcaggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggca 6371  T
Q  219 tcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacact 302  Q
    |  |||||||||||||||||||| ||| ||||||||| | |||||||  |||||||||| |||||| |||||||||||||||||    
T  6370 taagcttccaaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacact 6287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 10556 - 10257
Alignment:
Q  15 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 114  Q
    |||||| || ||||||||||||||||||| | ||||||||||| | |||| ||| |||||||| || || || | |||||||||||||||||||| | |     
T  10556 aacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagccatttttctttctcctcttgactc 10457  T
Q  115 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 214  Q
    |||| |||  ||| |||||| ||||||||||| ||||  ||||||| || ||||||||| | || ||||||||||||||||||||||||||| |||||||    
T  10456 tcattctctttccctttcttctcaggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaat 10357  T
Q  215 gacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctct 314  Q
     |||| ||||||||||||| ||||||| ||| ||  ||||| | ||| ||||||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  10356 aacataggcttccaaagcaaatgtacaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcacaacactctgttctcctct 10259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 12590231 - 12589942
Alignment:
Q  19 tgtggagcccaacccttaataatcatagccttcttctttc---cgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgt 115  Q
    ||||| ||||||||| |||| |||| | ||||||||||||   | ||  ||||||||||||| ||  | ||||||||||||| ||| ||||| ||| | |    
T  12590231 tgtggggcccaacccctaatgatcaaacccttcttctttctcccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactct 12590132  T
Q  116 catgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatg 215  Q
    |||  ||| ||| ||| || || |||| |||||||| ||||||||| |  |||||||| || || |||| ||||||||||||||||||||| || ||||     
T  12590131 catcttccttcccttttttctcgggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaata 12590032  T
Q  216 acatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctc 305  Q
     |||  ||| |||||||||||||||| ||| ||||||||| | |||||||| |||||||||| |||||| |||||  |||||||||||||    
T  12590031 gcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctc 12589942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 65 - 305
Target Start/End: Complemental strand, 12483477 - 12483237
Alignment:
Q  65 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 164  Q
    ||||||| ||||| ||||| |||||||| |||||||||||||| ||  | ||||  ||| ||| ||| || ||||||||||||||||||||||  | ||     
T  12483477 ttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaattttttacc 12483378  T
Q  165 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 264  Q
    ||||||||| || ||||| | ||| || ||||| |||||||| || ||||  ||| |||| |||||||||||||||| ||| || || ||||| || |||    
T  12483377 cgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgctttgag 12483278  T
Q  265 ttaagccaactcaaacactcgtgcacactcacaacactctc 305  Q
    || ||||||||   |||||| ||||| ||||||||||||||    
T  12483277 tttagccaactttgacactcatgcacgctcacaacactctc 12483237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 252
Target Start/End: Original strand, 13440363 - 13440550
Alignment:
Q  65 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 164  Q
    |||||||||| || |||||||||||||| ||||||||||| || ||| | ||||  ||  ||| |||||| |||||||||||||||||||||  ||||||    
T  13440363 ttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccatatgaatgggtgact 13440462  T
Q  165 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagtta 252  Q
     |||||||| ||  ||||||| |||||||| ||||||||||| || ||||       ||||||||| |||||||||| ||||||||||    
T  13440463 agatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagtta 13440550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 13448479 - 13448675
Alignment:
Q  15 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 114  Q
    ||||||||| ||||||||| |||| |||| | ||||||||   |||||| ||||||||||||| ||||| || ||||| ||||||||||| |||||  |     
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctc 13448575  T
Q  115 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 214  Q
    ||||  ||  ||| |||||| |||||||||||||||||||||  |||||  |||||||| ||| | || || ||||| || ||||||||||| |||||||    
T  13448576 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 13448675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 13455000 - 13455087
Alignment:
Q  68 tctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 155  Q
    |||||||||| ||||| |||||||| |||| ||||||||||||  | ||||  ||  ||| |||||| || |||||||||||||||||    
T  13455000 tctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctccggaacaacccatatgaa 13455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 274
Target Start/End: Complemental strand, 3417557 - 3417334
Alignment:
Q  51 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 150  Q
    ||||||||| ||  ||||||| ||||| ||||| |||||||| ||||||||||| ||||| || ||||  ||  | | |||||| ||| |||||||||||    
T  3417557 cttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctcaagaacaacccat 3417458  T
Q  151 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 250  Q
    ||||||  ||||| ||||||||| ||  || | ||||||||||| ||||||||||| || ||||    |  ||||||||| |||||||||| ||| ||||    
T  3417457 atgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagt 3417358  T
Q  251 tatcttgtttcgagttaagccaac 274  Q
    || ||||||  ||||| |||||||    
T  3417357 taacttgttgtgagttgagccaac 3417334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 252
Target Start/End: Original strand, 28385483 - 28385684
Alignment:
Q  51 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 150  Q
    ||||||||| ||  ||||||| ||||| |||||||||| ||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||    
T  28385483 cttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctcaggaacaacccat 28385582  T
Q  151 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 250  Q
    ||||||  |||||  |||||||| |   |||| ||||||||||| ||||||||||| || |||||   |  ||||||||| ||||||||||| || ||||    
T  28385583 atgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagt 28385682  T
Q  251 ta 252  Q
    ||    
T  28385683 ta 28385684  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 257
Target Start/End: Original strand, 12540848 - 12541040
Alignment:
Q  65 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 164  Q
    ||||||| ||||| ||||| |||| ||| ||||||||||| |||||| | ||||  ||  ||| | |||| |||||||||||||||||||||  |||||     
T  12540848 ttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccctctcttctcaggaacaacccatatgaatgggtgacc 12540947  T
Q  165 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttg 257  Q
    |  | |||| |   | || ||||||||||| |||||||| ||  | ||||||  |  ||||||||| |||||||||||||| |||||| ||||    
T  12540948 cattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttg 12541040  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 12641494 - 12641353
Alignment:
Q  65 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 164  Q
    |||||||||| || || || |||||||| |||||||||||||||||| | ||||  |   ||| |||||| ||||||||||||||||  ||||||||||     
T  12641494 ttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacc 12641395  T
Q  165 cgatgcttcaatcccgcacgcaatctcataaagttgtttatc 206  Q
     ||   ||| || |||| ||||||||| ||||||||||||||    
T  12641394 tgaattttctattccgctcgcaatctcgtaaagttgtttatc 12641353  T

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