View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_75 (Length: 314)
Name: NF8888_low_75
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 47249949 - 47249664
Alignment:
| Q |
12 |
agagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacatgagggggacattggttgattggttagttgaggttgcagatga |
111 |
Q |
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| T |
47249949 |
agagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacatgagggggacattggttgattggttagttgaggttgcagatga |
47249850 |
T |
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| Q |
112 |
atacaagcttcttcccgagacacttcatctgtcagtttcatacattgacagattcttatctattgaacctgtcagcagatctaagcttcagttgctcggt |
211 |
Q |
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| T |
47249849 |
atacaagcttcttcccgagacacttcatctgtcagtttcatacattgacagattcttatctattgaacctgtcagcagatctaagcttcagttgctcggt |
47249750 |
T |
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| Q |
212 |
gtttcatccatgctcattgcatcgtaagccctcaacaactgtttttatattcttacaaatgttgttatgtatttttacaaaaatct |
297 |
Q |
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| T |
47249749 |
gtttcatccatgctcattgcatcgtaagccctcaacaactgtttttatattcttacaaatgttgttatgtatttttacaaaaatct |
47249664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 47243129 - 47242881
Alignment:
| Q |
3 |
tggagaagcagagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacatgagggggacattggttgattggttagttgaggt |
102 |
Q |
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| T |
47243129 |
tggagaaaaagagaagaccaatgtttggttatatggagaatgttcaaagaggcattacatcaaacatgaggggcacattggttgattggttggttgaggt |
47243030 |
T |
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| Q |
103 |
tgcagatgaatacaagcttcttcccgagacacttcatctgtcagtttcatacattgacagattcttatctattgaacctgtcagcagatctaagcttcag |
202 |
Q |
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| T |
47243029 |
tgcagatgaatacacgcttcttccagaaacccttcatctctctgtttcatacattgatagattcttatctaaccaacctatcattagatctaagcttcag |
47242930 |
T |
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| Q |
203 |
ttgctcggtgtttcatccatgctcattgcatcgtaagccctcaacaact |
251 |
Q |
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| T |
47242929 |
ttgcttggtgtttcatccatgctcattgcatcgtaagatctcaacaact |
47242881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 47254377 - 47254150
Alignment:
| Q |
12 |
agagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacatgagggggacattggttgattggttagttgaggttgcagatga |
111 |
Q |
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| T |
47254377 |
agagaagaccaatgattggttatattgagaaagttcaaagaggtgttactgctaatatgagagggatactggttgattggttggttgaggttgctgaaga |
47254278 |
T |
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| Q |
112 |
atacaagcttcttcccgagacacttcatctgtcagtttcatacattgacagattcttatctattgaacctgtcagcagatctaagcttcagttgctcggt |
211 |
Q |
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|||||||||||| || | || |||||||| | ||||||||||||||||||||| | || | ||| |||||| ||||||||||||||| ||||| ||| |
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| T |
47254277 |
atacaagcttctccctcaaacccttcatcttgctgtttcatacattgacagattcctgtccaatgagtctgtcaacagatctaagcttcaattgcttggt |
47254178 |
T |
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| Q |
212 |
gtttcatccatgctcattgcatcgtaag |
239 |
Q |
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| T |
47254177 |
gtttcatccatgctcatcgcatcgtaag |
47254150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 47265980 - 47266027
Alignment:
| Q |
194 |
aagcttcagttgctcggtgtttcatccatgctcattgcatcgtaagcc |
241 |
Q |
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| T |
47265980 |
aagcttcaattgctgggtgtttcatccatgtacattgcatcgtaagcc |
47266027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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