View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_85 (Length: 285)
Name: NF8888_low_85
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_85 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 31457904 - 31457656
Alignment:
| Q |
21 |
agcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcaccgggaggtggtggatcatacatatctcgtggtgcatttgaaaacaaccctc |
120 |
Q |
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| T |
31457904 |
agcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcacctggaggtggtggatcatacatatctcgtggtgcatttgaaaacaaccctc |
31457805 |
T |
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| Q |
121 |
aaggctattttagtggtcttcattctgttgacaaggccaacaagtagtgctataattcatccagctattacttgtttttaactagcctcttaattttctc |
220 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31457804 |
aaggctattttagtggtcttcattctgctgacaaggccaacaagtagtgctataattcatccagctattacttgtttttaactagcctcttaattttctc |
31457705 |
T |
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| Q |
221 |
attaataaataattatgtaactgtgtggtggtgaatgtgatttatatat |
269 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
31457704 |
attaataaattaatatgtaactgtgtggtggtgaatgtgatttatatat |
31457656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 49085853 - 49085607
Alignment:
| Q |
21 |
agcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcaccgggaggtggtggatcatacatatctcgtggtgcatttgaaaacaaccctc |
120 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
49085853 |
agcaaagggtccaccggtggcagtggtggtggagattcaatgaaagcaccgggaggtggtggatcatacatatctcgtggtgcatttgaaagcaacccac |
49085754 |
T |
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| Q |
121 |
aaggctattttagtggtcttcattctgttgacaaggccaacaagtagtgctataattcatccagctattacttgtttttaactagcctcttaattttctc |
220 |
Q |
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| T |
49085753 |
aaggctattttggtggtcttcatgctgctgacaaggccaacaagtagtgctat--ttcatccagctattacttgtttttaactggcctcttaattttctc |
49085656 |
T |
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| Q |
221 |
attaataaataattatgtaactgtgtggtggtgaatgtgatttatatat |
269 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
49085655 |
attaataaataaatatgtaactgtgtggtggctaatgtgatttatatat |
49085607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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