View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_89 (Length: 279)
Name: NF8888_low_89
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 40 - 260
Target Start/End: Complemental strand, 125963 - 125742
Alignment:
| Q |
40 |
gataatacttaagagttgtatttgttattagaaaccattgattgacgaaatgtatgttgaaatgaat-agaagaaaagcttgtcgaaatgagtgcagtga |
138 |
Q |
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| T |
125963 |
gataatacttaagagttgtatttgttattagaaaccattgattgacgaaatgtacgttgaaatgaattagaagaaaaggttgtcgaaatgagtgcagtga |
125864 |
T |
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| Q |
139 |
aagaagcatgataaacatgaatattcgaaattgaaggtgaagaaagtaacatctgtagcattttatctcttgttagtaattttggatcatgtaagtaaca |
238 |
Q |
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| T |
125863 |
aagaagcatgataaacatgaatattcgaaattgaaggtgaagaaagtaacatatgtagcattttatctcttgttagtaattttggatcatgtaagtaaca |
125764 |
T |
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| Q |
239 |
caacatgagttgagcattatat |
260 |
Q |
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| T |
125763 |
caacatgagttgcgcattatat |
125742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 4412648 - 4412707
Alignment:
| Q |
70 |
gaaaccattgattgacgaaatgtatgttgaaatgaatagaagaaaagcttgtcgaaatga |
129 |
Q |
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| T |
4412648 |
gaaaccattgattgaggaaatgtatgctgaaatgaatagaagaaaagcttgtcgaaatga |
4412707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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