View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_95 (Length: 265)
Name: NF8888_low_95
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_95 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1136217 - 1135974
Alignment:
| Q |
1 |
tggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcgttcatgtcatgcatagccttaggaatctttaataattcttccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136217 |
tggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcgttcatgtcatgcatagccttaggaatctttaataattcttccaaa |
1136118 |
T |
|
| Q |
101 |
ccatttgaagtaaggttatgagtaatagccggacaattttgtttgatagaaatattggtttggttatcatggtcatatgatgtttttgagatgttggata |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136117 |
ccatttgaagtaaggttatgag---tagccggacaattttgtttgatagaaatattggtttggttatcatggtcatatgatgtttttgagatgttggata |
1136021 |
T |
|
| Q |
201 |
ataatattggaggagaatatgaaaaatgaggtggtggattgaggctt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136020 |
ataatattggaggagaatatgaaaaatgaggtggtggattgaggctt |
1135974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 1139428 - 1139183
Alignment:
| Q |
1 |
tggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcgttcatgtcatgcatagccttaggaatctttaataattcttccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139428 |
tggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcattcatgtcatgcatagccttaggaatctttaataattcttccaat |
1139329 |
T |
|
| Q |
101 |
ccatttgaagtaaggttatgagtaatagccggacaattttgtttgatagaaatattggtttggttatcatggtcatatgatgtttttgagatgttggata |
200 |
Q |
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| T |
1139328 |
ccatttgaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatattggtttggttattttggtcatatgatgtttttgagatgttggata |
1139229 |
T |
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| Q |
201 |
ataatattggaggagaatatgaaaaatgaggtggtggattgaggct |
246 |
Q |
| |
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| T |
1139228 |
gtagtattggaggagaatgtgaaaaatcaggtggtggattgaggct |
1139183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 54479309 - 54479541
Alignment:
| Q |
1 |
tggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcgttcatgtcatgcatagccttaggaatctttaataattcttccaaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| || || |||| ||| |
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| T |
54479309 |
tggagttttatgaatcataggttccaatgaagctctccaaaacaattcatcctcattcatgtcatgcatagccataggaatcttcaacaagtctttcaac |
54479408 |
T |
|
| Q |
101 |
ccatttgaagtaaggttatgagtaatagccggacaattttgtttgatagaaatattggtttggttatcatggtcatatgatgtttttgagatgttggata |
200 |
Q |
| |
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|||| |||||||||||||| ||||| | || |||| || ||||||||||||||| |||||||||| ||| ||| ||||| |||||| || |
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| T |
54479409 |
ccatgtgaagtaaggttattagtaacaaccaagcaatattttttgatagaaatatttgtttggttataatgctca---------tttgaaatgttgtatg |
54479499 |
T |
|
| Q |
201 |
ataatattggaggagaatatgaaaaatgaggtggtggattga |
242 |
Q |
| |
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|||||||||||||||||| |||| | ||||||||||||||| |
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|
| T |
54479500 |
ataatattggaggagaatgagaaacacgaggtggtggattga |
54479541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31269178 - 31269290
Alignment:
| Q |
1 |
tggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcgttcatgtcatgcatagccttaggaatctttaataattcttccaaa |
100 |
Q |
| |
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||||| |||||||||||||||| || |||||||||||||||||||| || || ||||| |||||||||||| | |||||||| || ||||| ||||| |
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| T |
31269178 |
tggaggtttatgaatcataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatcttcaaaaattcctccaac |
31269277 |
T |
|
| Q |
101 |
ccatttgaagtaa |
113 |
Q |
| |
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||||||||||||| |
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|
| T |
31269278 |
ccatttgaagtaa |
31269290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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