View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_high_15 (Length: 410)
Name: NF8889_high_15
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 44293779 - 44294014
Alignment:
| Q |
21 |
cttctgcactgatttcttgtcatgaccaaccttacacacaccctcaccctgtgacaaatgaaaaacaattgagtatctcatcagaaccactggatcatgc |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44293779 |
cttctgcactaatttcttgtcatgaccaaccttacagac--------cctgtgacaaatgaaaaacaattgagtatctcatcagaaccactggatcatgc |
44293870 |
T |
|
| Q |
121 |
ccctataatatggaccccactagtagtggggtaaaaaatagatagtcagaacaattttcactgtgacatagacagtgacatgagtcataaaatgaaatga |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44293871 |
ccctataatatggaccccactagtaatggggtaaaaaatagatagtcggaacaattttcactgtgacatagacagtgacatgagtcataaaatgaaatga |
44293970 |
T |
|
| Q |
221 |
aagaagcacaagttttctttttcaccacacaatatttattattt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44293971 |
aagaagcacaagttttctttttcaccacacaatatttattattt |
44294014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 44294267 - 44294340
Alignment:
| Q |
328 |
gcttgaagcttttgcatcgcattctaaa-caaaacaaagcccacaaattttgacccttaatccaacgctctctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44294267 |
gcttgaagcttttgcatcgcattctaaaacaaaacaaagcccacaaattttgacccttaatccaacgctctctg |
44294340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 44294195 - 44294236
Alignment:
| Q |
256 |
ttattatttttatttcctcagctcaaaaactgaaaaaccaca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44294195 |
ttattatttttatttcctcagctcaaaaactgaaaaaccaca |
44294236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University