View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_high_17 (Length: 404)
Name: NF8889_high_17
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 186 - 401
Target Start/End: Original strand, 26454346 - 26454561
Alignment:
| Q |
186 |
taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaacctgggcgttcttcaatatatttaagatcagatcg |
285 |
Q |
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| T |
26454346 |
taaccaataactaaacaggcaaaggtatgatctttttcaatttcactttcgacaattttctttaacctgggcgttcttcaatatatttaagatcagatcg |
26454445 |
T |
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| Q |
286 |
atcgaagtggttttgagtcagtgttgtgtatgatccatgttggtgtacattcgatcgcttatattttcttaaattattagggttttctacgagttagtgt |
385 |
Q |
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||||||||||||||| ||||||| | ||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26454446 |
atcgaagtggttttgtgtcagtgctatgtctgatccatgttggtgtatatttgatcgcttatattttcttaaattattagggttttctacgagttagtct |
26454545 |
T |
|
| Q |
386 |
cgtgtctgatgtccat |
401 |
Q |
| |
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||||||||| |||||| |
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| T |
26454546 |
cgtgtctgaagtccat |
26454561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26454105 - 26454272
Alignment:
| Q |
19 |
ttttaccaataaatagtgtgcaagttgcatgttttaccaaaatcactcaatgtgcaagttgtatgttttaaaatagtggtccctacagaatcactcaata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454105 |
ttttaccaataaatagtgtgcaagttgcatgttttaccaaaatcactcaatgtgcaagttgtatgttttaaaatagtggtccctacagaatcactcaata |
26454204 |
T |
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| Q |
119 |
aatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttgtcct |
186 |
Q |
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| T |
26454205 |
aatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttatcct |
26454272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 258 - 401
Target Start/End: Original strand, 26446240 - 26446386
Alignment:
| Q |
258 |
gttcttcaatatatttaagatcagatcgatcgaagtggttt-tgagtcagtgttgtgtatgatccatgttggtgtacattcgatcgcttatattttctta |
356 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| | ||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26446240 |
gttctttaatatatttaagatcagatcgattgaagtggtgtctgaatcaatgttgtgtctgatccatgttggtgtacatttgatcgcttatattttctta |
26446339 |
T |
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| Q |
357 |
aattattagggttttctacgagt--tagtgtcgtgtctgatgtccat |
401 |
Q |
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||||||||||||||||||||| | |||||| |||||||| |||||| |
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| T |
26446340 |
aattattagggttttctacgatttatagtgttgtgtctgaagtccat |
26446386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 401
Target Start/End: Complemental strand, 26449227 - 26449129
Alignment:
| Q |
303 |
tcagtgttgtgtatgatccatgttggtgtacattcgatcgcttatattttcttaaattattagggttttctacgagttagtgtcgtgtctgatgtccat |
401 |
Q |
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| T |
26449227 |
tcagtgttgtatctaatccatgttggtgtacattagatctcttatattttcttaaattattagggttgtctatgagttagtgttgtgtctgacgtccat |
26449129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 26445968 - 26446048
Alignment:
| Q |
105 |
agaatcactcaataaatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttgtcc |
185 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || || | |||||||||||||||| |
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| T |
26445968 |
agaatcactcaataaatagtgtgcaagttgtatgttttaccaaaacctaatacctaaccatgctattttgtttctttgtcc |
26446048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 26449495 - 26449431
Alignment:
| Q |
186 |
taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaa |
250 |
Q |
| |
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|||||||||||||||||| |||| | ||||||||||||| |||||| |||||||||||||||||| |
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| T |
26449495 |
taaccaataactcaacagacaaatgcatgatctttttcattttcactttcgacaattttctttaa |
26449431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 26446122 - 26446196
Alignment:
| Q |
186 |
taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaacctgggcgtt |
260 |
Q |
| |
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||||||| ||||||| | ||||||||||||| ||||||||||||| |||||||||||| ||||| |||| |||| |
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| T |
26446122 |
taaccaaccactcaactgacaaaggtatgatccttttcaatttcactttcgacaattttatttaatctggccgtt |
26446196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 26445977 - 26446012
Alignment:
| Q |
25 |
caataaatagtgtgcaagttgcatgttttaccaaaa |
60 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
26445977 |
caataaatagtgtgcaagttgtatgttttaccaaaa |
26446012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 26445897 - 26445934
Alignment:
| Q |
107 |
aatcactcaataaatagtgtgtaagttgtatgttttac |
144 |
Q |
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||||||||||| ||||||||| |||||||||||||||| |
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| T |
26445897 |
aatcactcaatcaatagtgtgcaagttgtatgttttac |
26445934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 26445853 - 26445907
Alignment:
| Q |
19 |
ttttaccaataaat---agtgtgcaagttgcatgtttt-accaaaatcactcaat |
69 |
Q |
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|||||||||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
26445853 |
ttttaccaataaattagagtgtgcaggttgcatgtttttaccaaaatcactcaat |
26445907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 26445904 - 26445948
Alignment:
| Q |
25 |
caataaatagtgtgcaagttgcatgttttaccaaaatcactcaat |
69 |
Q |
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|||| |||||||||||||||| ||||||||| | ||||||||||| |
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| T |
26445904 |
caatcaatagtgtgcaagttgtatgttttacaagaatcactcaat |
26445948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 309 - 394
Target Start/End: Original strand, 29673360 - 29673445
Alignment:
| Q |
309 |
ttgtgtatgatccatgttggtgtacattcgatcgcttatattttcttaaattattagggttttctacgagttagtgtcgtgtctga |
394 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
29673360 |
ttgtgtctgatacatgttggtgtacatttgatcgcttatattttcttaaattattagggttgtctacgagttagtgttgtgtctga |
29673445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 29673165 - 29673209
Alignment:
| Q |
142 |
taccaaaaccgaatacctagccgtgttgttttgtttctttgtcct |
186 |
Q |
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| T |
29673165 |
taccaaaacctaattcctagtcgtgttgttttgtttctttgtcct |
29673209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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