View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_high_19 (Length: 361)

Name: NF8889_high_19
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_high_19
NF8889_high_19
[»] chr2 (5 HSPs)
chr2 (21-323)||(38325845-38326155)
chr2 (21-323)||(38326604-38326914)
chr2 (21-154)||(1503766-1503903)
chr2 (21-154)||(1506970-1507107)
chr2 (93-136)||(4577515-4577558)
[»] chr5 (8 HSPs)
chr5 (21-323)||(34653088-34653395)
chr5 (74-313)||(3194685-3194925)
chr5 (26-129)||(2453008-2453117)
chr5 (21-112)||(19689238-19689336)
chr5 (21-112)||(19685855-19685953)
chr5 (27-111)||(28562699-28562790)
chr5 (27-111)||(28566267-28566358)
chr5 (74-112)||(25185073-25185111)
[»] chr3 (8 HSPs)
chr3 (21-357)||(44508247-44508594)
chr3 (26-136)||(9154480-9154596)
chr3 (21-131)||(9157658-9157774)
chr3 (21-112)||(18882901-18882999)
chr3 (29-136)||(42354752-42354863)
chr3 (27-154)||(25888752-25888884)
chr3 (74-111)||(2783809-2783846)
chr3 (26-70)||(18551405-18551449)
[»] chr4 (6 HSPs)
chr4 (29-154)||(11702928-11703057)
chr4 (21-129)||(10247473-10247588)
chr4 (26-154)||(33400670-33400790)
chr4 (21-136)||(10385628-10385736)
chr4 (21-112)||(23652968-23653066)
chr4 (106-154)||(27013926-27013973)
[»] scaffold0214 (3 HSPs)
scaffold0214 (21-136)||(19721-19843)
scaffold0214 (37-154)||(13254-13376)
scaffold0214 (37-154)||(27270-27392)
[»] chr7 (7 HSPs)
chr7 (27-136)||(22256922-22257036)
chr7 (45-136)||(23467443-23467540)
chr7 (74-136)||(22233025-22233087)
chr7 (74-136)||(22253652-22253714)
chr7 (27-112)||(20100331-20100423)
chr7 (27-110)||(748381-748471)
chr7 (27-149)||(11825695-11825825)
[»] chr8 (4 HSPs)
chr8 (21-154)||(30645120-30645259)
chr8 (45-120)||(31981039-31981121)
chr8 (27-112)||(22653949-22654041)
chr8 (74-120)||(31984674-31984720)
[»] chr6 (7 HSPs)
chr6 (21-112)||(34502024-34502128)
chr6 (21-74)||(31262503-31262556)
chr6 (26-74)||(7560513-7560561)
chr6 (21-111)||(2330318-2330415)
chr6 (21-112)||(17696276-17696374)
chr6 (303-357)||(3827381-3827436)
chr6 (106-154)||(5738496-5738543)
[»] scaffold0014 (1 HSPs)
scaffold0014 (74-120)||(227032-227078)
[»] scaffold0360 (2 HSPs)
scaffold0360 (96-129)||(2151-2184)
scaffold0360 (96-136)||(5970-6010)
[»] scaffold0381 (1 HSPs)
scaffold0381 (106-154)||(5811-5858)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 38326155 - 38325845
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaag 113  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||       |||||||||| |||| | |||||||||||||||||||||    
T  38326155 cacaaataattctgaataaagacggaataatattgataataaagaaagtttcaactactgattcatatattccaataggttcatcatggctcaatcaaag 38326056  T
Q  114 ggaattaactagacatgattaaaatgaataaacaacgtagtnnnnnnn-taaacggatagaattccgtcgttaccaacgttcttccccaatttctctcga 212  Q
    ||||||| |||||||||||||||| ||||||||||||||||        ||||  |||||||||||||||||||| |||||||||||||||||||||| |    
T  38326055 ggaattagctagacatgattaaaaagaataaacaacgtagtaaagaaaataaatcgatagaattccgtcgttaccgacgttcttccccaatttctctcaa 38325956  T
Q  213 tcagtgttgttgttatattggaatttccatgtagctatcccctcctctttacttcgcgtgatgcgcgataccttcttttccttccagaacgtgattgcac 312  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  38325955 tcagtgttgttgttatattggaattttcatgtagctatcccctcctcttttcttctcgtgatgcgcgataccttcttttccttccaaaacgtgattgcac 38325856  T
Q  313 aaaacgtgaat 323  Q
    |||||||||||    
T  38325855 aaaacgtgaat 38325845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 38326604 - 38326914
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaag 113  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||       |||||||||| |||| | |||||||||||||||||||||    
T  38326604 cacaaataattctgaataaagacggaataatattgataataaagaaagtttcaactactgattcatatattccaataggttcatcatggctcaatcaaag 38326703  T
Q  114 ggaattaactagacatgattaaaatgaataaacaacgtagtnnnnnnn-taaacggatagaattccgtcgttaccaacgttcttccccaatttctctcga 212  Q
    ||||||| |||||||||||||||| ||||||||||||||||        ||||  |||||||||||||||||||| |||||||||||||||||||||| |    
T  38326704 ggaattagctagacatgattaaaaagaataaacaacgtagtaaagaaaataaatcgatagaattccgtcgttaccgacgttcttccccaatttctctcaa 38326803  T
Q  213 tcagtgttgttgttatattggaatttccatgtagctatcccctcctctttacttcgcgtgatgcgcgataccttcttttccttccagaacgtgattgcac 312  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  38326804 tcagtgttgttgttatattggaattttcatgtagctatcccctcctcttttcttctcgtgatgcgtgataccttcttttccttccaaaacgtgattgcac 38326903  T
Q  313 aaaacgtgaat 323  Q
    |||||||||||    
T  38326904 aaaacgtgaat 38326914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 1503766 - 1503903
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa-----ttcatatattacaattgattcatcatggctcaatcaaaggg 115  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||     ||||||||||||||| | ||||||||||||||||||||| |    
T  1503766 cacaaataattctgaataaagactgaataatattgataataaagagagtttcaactacattcatatattacaataggttcatcatggctcaatcaaagag 1503865  T
Q  116 aattaactagacatgattaaaatgaataaacaacgtagt 154  Q
    ||||| |||||||||||| |||| |||||||||| ||||    
T  1503866 aattagctagacatgatt-aaataaataaacaacatagt 1503903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 1506970 - 1507107
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa-----ttcatatattacaattgattcatcatggctcaatcaaaggg 115  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||     ||||||||||||||| | ||||||||||||||||||||| |    
T  1506970 cacaaataattctgaataaagactgaataatattgataataaagagagtttcaactacattcatatattacaataggttcatcatggctcaatcaaagag 1507069  T
Q  116 aattaactagacatgattaaaatgaataaacaacgtagt 154  Q
    ||||| |||||||||||| |||| |||||||||| ||||    
T  1507070 aattagctagacatgatt-aaataaataaacaacatagt 1507107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 4577558 - 4577515
Alignment:
Q  93 ttcatcatggctcaatcaaagggaattaactagacatgattaaa 136  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||    
T  4577558 ttcatcatgactcaatcaaagggaattagctagacataattaaa 4577515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 34653088 - 34653395
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaag 113  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||       ||||||||||||||| |||||||   ||||||||||||     
T  34653088 cacaaataattctgaataaagactgaataatattgataataaagagagtttcaactactaattcatatattacaatagattcat---ggctcaatcaaat 34653184  T
Q  114 ggaattaactagacatgattaaaatgaataaacaacgtagtnnnnnnn-taaacggatagaattccgtcgttaccaacgttcttccccaatttctctcga 212  Q
    ||||||| |||||||||||||||| ||||||||||| ||||        ||||| |||||||||||||||||||| |||||||||||||||||||||| |    
T  34653185 ggaattagctagacatgattaaaaagaataaacaacatagtaaagaaaataaaccgatagaattccgtcgttaccgacgttcttccccaatttctctcaa 34653284  T
Q  213 tcagtgttgttgttatattggaatttccatgtagctatcccctcctctttacttcgcgtgatgcgcgataccttcttttccttccagaacgtgattgcac 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  34653285 tcagtgttgttgttatattggaatttccatgtagctatcccctcctcttttcttctcgtgatgcgcgataccttcttttccttccaaaacgtgattgcac 34653384  T
Q  313 aaaacgtgaat 323  Q
    |||||||||||    
T  34653385 aaaacgtgaat 34653395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 74 - 313
Target Start/End: Complemental strand, 3194925 - 3194685
Alignment:
Q  74 attcatatattacaattgattcatcatggctcaatcaaagggaattaactagacatgattaaaatgaataaacaacgtagtnnnnnnn-taaacggatag 172  Q
    |||||||||||||||| | |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||        ||||| |||||    
T  3194925 attcatatattacaataggttcatcatggctcaatcaaagggaattagctatacatgattaaaaagaataaacaacatagtaaagaaaataaaccgatag 3194826  T
Q  173 aattccgtcgttaccaacgttcttccccaatttctctcgatcagtgttgttgttatattggaatttccatgtagctatcccctcctctttacttcgcgtg 272  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  3194825 aattccgtcgttaccgacgtttttccccaatttctctcgattagtgttgttgttatattggaatttccatgtagctatcccctcctcttttcttctcgtg 3194726  T
Q  273 atgcgcgataccttcttttccttccagaacgtgattgcaca 313  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  3194725 atgcgcgataccttcttttccttccaaaacgtgattgcaca 3194685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 2453117 - 2453008
Alignment:
Q  26 ataattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaagggaat 118  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||||||       ||||||||||||||| | ||||||||||||||||||||||||||    
T  2453117 ataattctgaataaagactgaataatattgataataaa-agagtttcaactactaattcatatattacaataggttcatcatggctcaatcaaagggaat 2453019  T
Q  119 taactagacat 129  Q
    || ||||||||    
T  2453018 tagctagacat 2453008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 19689336 - 19689238
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttca-------attcatatattacaattgattcatcatggctcaatcaaa 112  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||    
T  19689336 cacaaataattctgaataaagactgaataatattgataataaagagagtttcaactactgattcatatattacaatagattcatcatggctcaatcaaa 19689238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 19685953 - 19685855
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttca-------attcatatattacaattgattcatcatggctcaatcaaa 112  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||       |||||||||||||||| |||| |||||||||||||||||    
T  19685953 cacaaataattctgaataaagactgaataatattgataataaagagagtttcaactactgattcatatattacaatagatttatcatggctcaatcaaa 19685855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 28562699 - 28562790
Alignment:
Q  27 taattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaa 111  Q
    ||||||||| ||||||| |||||| ||| |||||||||||||  ||||       ||||||||||||||| |||||||||||||| ||||||    
T  28562699 taattctgaataaagactgaataacattaataataaagagaggatcaactactgattcatatattacaatagattcatcatggcttaatcaa 28562790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 28566267 - 28566358
Alignment:
Q  27 taattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaa 111  Q
    ||||||||| ||||||| |||||| ||| |||||||||||||  ||||       ||||||||||||||| |||||||||||||| ||||||    
T  28566267 taattctgaataaagactgaataacattaataataaagagaggatcaactactgattcatatattacaatagattcatcatggcttaatcaa 28566358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 25185111 - 25185073
Alignment:
Q  74 attcatatattacaattgattcatcatggctcaatcaaa 112  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  25185111 attcatatattacaataggttcatcatggctcaatcaaa 25185073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 44508594 - 44508247
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaag 113  Q
    |||| |||||||||| ||||||  ||||||||||||||||||||||||||| ||       ||||||||||||||| | |||||||||||||||| ||||    
T  44508594 cacaaataattctgaataaagattgaataatattgataataaagagagttttaactactgattcatatattacaataggttcatcatggctcaattaaag 44508495  T
Q  114 ggaattaactagacatgattaaaatgaataaacaacgtagtnnnnnnn-taaacggatagaattccgtcgttaccaacgttcttccccaatttctctcga 212  Q
    ||||||||||||||  |||||||| ||||||||||| ||||        ||||  |||||||||||||||||||  | |||||||||||||||||||| |    
T  44508494 ggaattaactagac--gattaaaaagaataaacaacatagtaaagaaaataaatcgatagaattccgtcgttactgatgttcttccccaatttctctcaa 44508397  T
Q  213 tcagt----gttgttgttatattggaatttccatgtagctatcccctcctctttacttcgcgtgatgcgcgataccttcttttccttccagaacgtgatt 308  Q
    ||| |    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||    
T  44508396 tcaatcaatgttgttgttatattggaatttccatgtagctatcccctcctcttttcttctcgtgatgcgcgatcccttcttttccttcca-aacgtgatt 44508298  T
Q  309 gcacaaaacgtgaatt-ctgttcttgtg-ttgtgcggcttcttttatataa 357  Q
    ||||||||||||||||  | |||||||| | ||||||||||||||||||||    
T  44508297 gcacaaaacgtgaattgatcttcttgtgctggtgcggcttcttttatataa 44508247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 9154596 - 9154480
Alignment:
Q  26 ataattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaagggaat 118  Q
    |||||||||| |||||||||| |||||| ||||||||||||| ||||||       ||||||||||||||| | ||||||||||||||||||||||||||    
T  9154596 ataattctgaataaagaccgagtaatatcgataataaagaga-tttcaactactgattcatatattacaataggttcatcatggctcaatcaaagggaat 9154498  T
Q  119 taactagacatgattaaa 136  Q
    || |||||||||||||||    
T  9154497 tagctagacatgattaaa 9154480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 9157774 - 9157658
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttca------attcatatattacaattgattcatcatggctcaatcaaagg 114  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||||||||  |      |||||||||||||||| | ||||||||||||||||||||||    
T  9157774 cacaaataattctgaataaagactgaataatattgataataaagagagttcaactactgattcatatattacaataggttcatcatggctcaatcaaagg 9157675  T
Q  115 gaattaactagacatga 131  Q
     ||||| ||||||||||    
T  9157674 aaattagctagacatga 9157658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 18882999 - 18882901
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttca-------attcatatattacaattgattcatcatggctcaatcaaa 112  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||||| |||||       |||||||||||||||| ||||||||||||||||||||||    
T  18882999 cacaaataattctgaataaagactgaataatattgataataaagagattttcaactactgattcatatattacaatagattcatcatggctcaatcaaa 18882901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 42354752 - 42354863
Alignment:
Q  29 attctgactaaagaccgaataatattgataataaagagagtttca-----attcatatattacaattgattcatcatggctcaatcaaagggaattaact 123  Q
    ||||||| ||||||| ||||||||||||||||||||| | |||||     |||||||||||||||| | ||||||||| |||||||||| ||||||| ||    
T  42354752 attctgaataaagactgaataatattgataataaagacaatttcaactacattcatatattacaataggttcatcatgactcaatcaaa-ggaattagct 42354850  T
Q  124 agacatgattaaa 136  Q
    |||||||||||||    
T  42354851 agacatgattaaa 42354863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 25888752 - 25888884
Alignment:
Q  27 taattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaagggaatt 119  Q
    ||||||||| ||||||| |||||| ||| |||||||||||||| ||||       ||||||||||||||| |||||||||||||| |||||||  |||||    
T  25888752 taattctgaataaagactgaataacattaataataaagagagtatcaactactgattcatatattacaatagattcatcatggcttaatcaaa-agaatt 25888850  T
Q  120 aactagacatgattaaaatgaataaacaacgtagt 154  Q
    | |||||||||||| ||| ||||||||||| ||||    
T  25888851 agctagacatgatt-aaaggaataaacaacatagt 25888884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 2783846 - 2783809
Alignment:
Q  74 attcatatattacaattgattcatcatggctcaatcaa 111  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  2783846 attcatatattacaatagattcatcatggcttaatcaa 2783809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 18551449 - 18551405
Alignment:
Q  26 ataattctgactaaagaccgaataatattgataataaagagagtt 70  Q
    |||||||||| ||||||| ||||  ||||||||||||||||||||    
T  18551449 ataattctgaataaagactgaatgttattgataataaagagagtt 18551405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 11702928 - 11703057
Alignment:
Q  29 attctgactaaagaccgaataatattgataataaagagagtttcaa-----ttcatatattacaattgattcatcatggctcaatcaaagggaattaact 123  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||     ||||||||||||||| | || |||||||||||||||||| |||||| ||    
T  11702928 attctgaataaagactgaataatattgataataaagagagtttcaactacattcatatattacaataggtttatcatggctcaatcaaagagaattagct 11703027  T
Q  124 agacatgattaaaatgaataaacaacgtagt 154  Q
    |||||||||| |||| |||||||||| ||||    
T  11703028 agacatgatt-aaataaataaacaacatagt 11703057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 10247588 - 10247473
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttca-------attcatatattacaattgattcatcatggctcaatcaaag 113  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |       |||||||||||||||| | |||||| || ||||||||||     
T  10247588 cacagataattctgaataaagactgaataatattgataataaaaagagttttaactactgattcatatattacaataggttcatcgtgactcaatcaaat 10247489  T
Q  114 ggaattaactagacat 129  Q
    ||||||||||||||||    
T  10247488 ggaattaactagacat 10247473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 33400670 - 33400790
Alignment:
Q  26 ataattctgactaaagaccgaataatattgataataaagagagtttcaattcatatattacaattgattcatcatggctcaatcaaagggaattaactag 125  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| |||||      ||| ||| | ||||| |||| |||||||||||||||||  |||    
T  33400670 ataattctgaataaagaccgaataatattgataacaaagagagttccaatt------ttataataggttcattatggttcaatcaaagggaattagatag 33400763  T
Q  126 acatgattaaaatgaataaacaacgtagt 154  Q
    |||||||||||  ||||||||||| ||||    
T  33400764 acatgattaaa--gaataaacaacatagt 33400790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 10385736 - 10385628
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaattcatatattacaattgattcatcatggctcaatcaaagggaatta 120  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |  |       |||| ||  |||||||||||||||||| ||||||    
T  10385736 cacaaataattctgaataaagactgaataatattgataataaagagagtttcaactact-------aattcatatatcatggctcaatcaaagagaatta 10385644  T
Q  121 actagacatgattaaa 136  Q
    ||||||||||| ||||    
T  10385643 actagacatgaataaa 10385628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 23653066 - 23652968
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa--------ttcatatattacaattgattcatcatggctcaatcaaa 112  Q
    |||| |||||||||| ||||||  |||||| ||||||||||||||||| |||||        |||| |||||||||| | ||||||||||||||||||||    
T  23653066 cacaaataattctgaataaagattgaataacattgataataaagagag-ttcaactacttggttcacatattacaataggttcatcatggctcaatcaaa 23652968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 27013973 - 27013926
Alignment:
Q  106 aatcaaagggaattaactagacatgattaaaatgaataaacaacgtagt 154  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||| ||||    
T  27013973 aatcaaaggaaattagctagacatgattaaaat-aataaacaacatagt 27013926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 19843 - 19721
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaag 113  Q
    |||| |||||||||  ||||||  ||||||||||||||||||||||||||||||       ||||||||||||||| | |||||||||||||||||||||    
T  19843 cacaaataattctggataaagagtgaataatattgataataaagagagtttcaactactgattcatatattacaataggttcatcatggctcaatcaaag 19744  T
Q  114 ggaattaactagacatgattaaa 136  Q
    ||||||| |||||||| ||||||    
T  19743 ggaattagctagacataattaaa 19721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 13376 - 13254
Alignment:
Q  37 taaagaccgaataatattgataataaagagagtttcaatt-------catatattacaattgattcatcatggctcaatcaaagggaattaactagacat 129  Q
    ||||||| ||||||||||||||||||| ||||||||||||       ||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  13376 taaagactgaataatattgataataaa-agagtttcaattactgattcatatattacaataggttcatcatggctcaatcaaagggaattagctagacat 13278  T
Q  130 gattaaaatgaataaacaacgtagt 154  Q
     |||||||  |||||||||| ||||    
T  13277 aattaaaa-aaataaacaacatagt 13254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 27392 - 27270
Alignment:
Q  37 taaagaccgaataatattgataataaagagagtttcaatt-------catatattacaattgattcatcatggctcaatcaaagggaattaactagacat 129  Q
    ||||||| ||||||||||||||||||| ||||||||||||       ||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  27392 taaagactgaataatattgataataaa-agagtttcaattactgattcatatattacaataggttcatcatggctcaatcaaagggaattagctagacat 27294  T
Q  130 gattaaaatgaataaacaacgtagt 154  Q
     |||||||  |||||||||| ||||    
T  27293 aattaaaa-aaataaacaacatagt 27270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 22257036 - 22256922
Alignment:
Q  27 taattctgactaaagaccgaataatattgataataaagagagtttcaa-----ttcatatattacaattgattcatcatggctcaatcaaagggaattaa 121  Q
    ||||||||| ||||||| ||||||  || |||||||||||||| ||||     ||||||||||||||| | |||||||||||||||||||||| ||||||    
T  22257036 taattctgaataaagactgaataacgttaataataaagagagtatcaactacattcatatattacaataggttcatcatggctcaatcaaaggaaattaa 22256937  T
Q  122 ctagacatgattaaa 136  Q
    |||||||||||||||    
T  22256936 ctagacatgattaaa 22256922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 23467443 - 23467540
Alignment:
Q  45 gaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaagggaattaactagacatgattaaa 136  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||    
T  23467443 gaataatattgataataaagagagtttcaactactgattcatatattacaatagattcatcatggctcaatcaaa-ggaattagctagacataattaaa 23467540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 22233025 - 22233087
Alignment:
Q  74 attcatatattacaattgattcatcatggctcaatcaaagggaattaactagacatgattaaa 136  Q
    |||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  22233025 attcatatattacaataggttcatcatggctcaatcaaagggaattagctagacatgattaaa 22233087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 22253714 - 22253652
Alignment:
Q  74 attcatatattacaattgattcatcatggctcaatcaaagggaattaactagacatgattaaa 136  Q
    |||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  22253714 attcatatattacaataggttcatcatggctcaatcaaagggaattagctagacatgattaaa 22253652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 20100423 - 20100331
Alignment:
Q  27 taattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaa 112  Q
    ||||||||| ||||||| |||||| ||| |||||||||||||| ||||       ||||||||||||||| | ||||||||||||||||||||    
T  20100423 taattctgaataaagactgaataacattaataataaagagagtatcaactactgattcatatattacaataggttcatcatggctcaatcaaa 20100331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 748381 - 748471
Alignment:
Q  27 taattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatca 110  Q
    ||||||||| ||||||| |||||| ||| |||||||||||||| ||||       ||||||||||||||| | ||||||||||||||||||    
T  748381 taattctgaataaagacagaataacattaataataaagagagtatcaactactgattcatatattacaataggttcatcatggctcaatca 748471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 11825695 - 11825825
Alignment:
Q  27 taattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatca--aagggaa 117  Q
    ||||||||| ||||||  |||||| ||| |||||||||||||| ||||       ||||||||||||||| | |||||||||||| |||||  |||| ||    
T  11825695 taattctgaataaagattgaataacattaataataaagagagtatcaactactgattcatatattacaataggttcatcatggcttaatcaacaaggaaa 11825794  T
Q  118 ttaactagacatgattaaaatgaataaacaac 149  Q
    ||| |||||||||| | ||| |||||||||||    
T  11825795 ttagctagacatga-tcaaacgaataaacaac 11825825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 30645259 - 30645120
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaag 113  Q
    |||| |||||||||| ||||||| | |||||||| |||||||||||||||||||       ||||||||||||||| | ||||||||  |||||||||||    
T  30645259 cacaaataattctgaataaagactggataatattaataataaagagagtttcaactattaattcatatattacaataggttcatcataactcaatcaaag 30645160  T
Q  114 ggaattaactagacatgattaaaatgaataaacaacgtagt 154  Q
    |||||||  ||||||||||| ||| ||||||||||| ||||    
T  30645159 ggaattagttagacatgatt-aaaggaataaacaacatagt 30645120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 31981121 - 31981039
Alignment:
Q  45 gaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaagggaatta 120  Q
    ||||||||||||||||||| ||||||||||       ||||||||||||||| | || |||||||||||||||||||||||||    
T  31981121 gaataatattgataataaaaagagtttcaactactgattcatatattacaataggtttatcatggctcaatcaaagggaatta 31981039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 22654041 - 22653949
Alignment:
Q  27 taattctgactaaagaccgaataatattgataataaagagagtttcaa-------ttcatatattacaattgattcatcatggctcaatcaaa 112  Q
    ||||||||| ||||||| |||||| ||| |||||||||||||| ||||       ||||||||||||||| | ||||||||||||||||||||    
T  22654041 taattctgaataaagactgaataacattaataataaagagagtatcaactattgattcatatattacaataggttcatcatggctcaatcaaa 22653949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 31984720 - 31984674
Alignment:
Q  74 attcatatattacaattgattcatcatggctcaatcaaagggaatta 120  Q
    |||||||||||||||| | || |||||||| ||||||||||||||||    
T  31984720 attcatatattacaataggtttatcatggcccaatcaaagggaatta 31984674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 34502128 - 34502024
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttca-------attcatatattacaatt------gattcatcatggctcaa 107  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||       |||||||||||||||||      |||||||||||||||||    
T  34502128 cacaaataattctgaataaagactgaataatattgataataaagagagtttcaactactgattcatatattacaattacaatagattcatcatggctcaa 34502029  T
Q  108 tcaaa 112  Q
    |||||    
T  34502028 tcaaa 34502024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 31262556 - 31262503
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttcaa 74  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  31262556 cacaaataattctgaataaagaccgaataaaattgataataaagagagtttcaa 31262503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 7560513 - 7560561
Alignment:
Q  26 ataattctgactaaagaccgaataatattgataataaagagagtttcaa 74  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7560513 ataattctgaataaagactgaataatattgataataaagagagtttcaa 7560561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 2330415 - 2330318
Alignment:
Q  21 cacagataattctgactaaagaccgaataatattgataataaagagagtttca-------attcatatattacaattgattcatcatggctcaatcaa 111  Q
    |||| |||||| ||| ||||||| |||||||||||||||||||||||| ||||       || ||||||||||||| | |||||||||||||||||||    
T  2330415 cacaaataattatgaataaagactgaataatattgataataaagagagcttcaactactgatccatatattacaataggttcatcatggctcaatcaa 2330318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 17696374 - 17696276
Alignment:
Q  21 cacagataattctgactaaagaccgaataat-attgataataaagagagtttca------attcatatattacaattgattcatcatggctcaatcaaa 112  Q
    |||| |||||||| | ||||||| ||||||| |||||||||||||||||||  |      |||||||||||||||| | ||||||||||||||||||||    
T  17696374 cacaaataattctaaataaagactgaataatcattgataataaagagagttcaactactgattcatatattacaataggttcatcatggctcaatcaaa 17696276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 3827381 - 3827436
Alignment:
Q  303 gtgattgcacaaaacgtgaattc-tgttcttgtgttgtgcggcttcttttatataa 357  Q
    ||||||||||| |||||||||   |||||||||| |||||||||||||||||||||    
T  3827381 gtgattgcacagaacgtgaatagatgttcttgtgctgtgcggcttcttttatataa 3827436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 5738496 - 5738543
Alignment:
Q  106 aatcaaagggaattaactagacatgattaaaatgaataaacaacgtagt 154  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||| ||||    
T  5738496 aatcaaaggaaattagctagacatgattaaaat-aataaacaacatagt 5738543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 227078 - 227032
Alignment:
Q  74 attcatatattacaattgattcatcatggctcaatcaaagggaatta 120  Q
    |||||||||||||||| | || |||||||| ||||||||||||||||    
T  227078 attcatatattacaataggtttatcatggcccaatcaaagggaatta 227032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 2184 - 2151
Alignment:
Q  96 atcatggctcaatcaaagggaattaactagacat 129  Q
    ||||||||||||||||||||||||| ||||||||    
T  2184 atcatggctcaatcaaagggaattagctagacat 2151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 6010 - 5970
Alignment:
Q  96 atcatggctcaatcaaagggaattaactagacatgattaaa 136  Q
    ||||||||||||||||||||||||| ||| |||||| ||||    
T  6010 atcatggctcaatcaaagggaattagctaaacatgaataaa 5970  T

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Target: scaffold0381 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 5811 - 5858
Alignment:
Q  106 aatcaaagggaattaactagacatgattaaaatgaataaacaacgtagt 154  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||| ||||    
T  5811 aatcaaaggaaattagctagacatgattaaaat-aataaacaacatagt 5858  T

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