View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_high_26 (Length: 322)
Name: NF8889_high_26
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 44577698 - 44577992
Alignment:
| Q |
15 |
cctaccacaaagtttgcaagattgctgacctagttaaagccgagactcatttccttttgcttcagttctaaagccatacgttcattttcaagcttcattc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44577698 |
cctaccacaaagtttgcaagattgctgacctagttaaagccgagactcatttccttttgcttcagttctaaagccatacgttcattttcaagcttcattc |
44577797 |
T |
|
| Q |
115 |
tttcgttttctagactcagcttctccaactcccggtccttttgcttgctaaatctctgccacttgaatctttgtttctctaattccaacttctcagcctg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44577798 |
tttcgttttctagactcagcttctccaactcccggtccttttgcttgctaaatctctgccacttgaatctttgtttctctaattccaacttctcagcctg |
44577897 |
T |
|
| Q |
215 |
aatttgtaacttttgctcttctaactgaacttggcgagagtcaacccattgcttctgtaaccatgctgctctcatgttttcaggtataacttgat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44577898 |
aatttgtaacttttgctcttctaactgaacttggcgagagtcaacccattgcttctgtaaccatgctgctctcatgttttcaggtataacttgat |
44577992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 293
Target Start/End: Original strand, 35923779 - 35923911
Alignment:
| Q |
162 |
ctaaatctctgccacttgaatctttgtttctctaattccaacttctcagcctgaatttgtaac-ttttgctcttctaactgaacttggcgagagtcaacc |
260 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| || || |||| ||||| ||| |||||||| | |||| ||| ||||| ||||||||||||||| | || |
|
|
| T |
35923779 |
ctaaatctcttccaattgaatctttgtttctatattttcaacatctcaaccttaatttgtagctttttactcctctaattgaacttggcgagaggtagcc |
35923878 |
T |
|
| Q |
261 |
cattgcttctgtaaccatgctgctctcatgttt |
293 |
Q |
| |
|
| || ||| |||||||| | ||||||||||||| |
|
|
| T |
35923879 |
cgttacttttgtaaccaagttgctctcatgttt |
35923911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 66 - 300
Target Start/End: Complemental strand, 12638647 - 12638413
Alignment:
| Q |
66 |
tccttttgcttcagttctaaagccatacgttcattttcaagcttcattctttcgttttctagactcagcttctccaactcccggtccttttgcttgctaa |
165 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||| |||| ||||||||| || ||||| || | | |||||||||||| ||||| |||| |||||||| |
|
|
| T |
12638647 |
tcctttcgctttagttctaaagcaatacgttcattctcaatcttcattctgtcattttccagcttgaacttctccaactctcggtcttttttcttgctaa |
12638548 |
T |
|
| Q |
166 |
atctctgccacttgaatctttgtttctctaattccaacttctcagcctgaatttgtaacttttgctcttctaactgaacttggcgagagtcaacccattg |
265 |
Q |
| |
|
| |||| |||||||||| |||||||||||| ||||| | ||||| ||||||| |||||||| || |||||||||||||| |||||| |||| |||||| |
|
|
| T |
12638547 |
acctctcccacttgaatttttgtttctctagttccatcatctcaacctgaatctgtaacttctgttcttctaactgaaccgagcgagattcaatccattg |
12638448 |
T |
|
| Q |
266 |
cttctgtaaccatgctgctctcatgttttcaggta |
300 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||| |
|
|
| T |
12638447 |
cttctgtaaccaagctgctttcatgttttccggta |
12638413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University