View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_high_31 (Length: 292)
Name: NF8889_high_31
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 25265803 - 25265686
Alignment:
| Q |
152 |
ttggccgaatttcttaatagaaattacttgttaatgaaacttattactaattaaagtagttagtaatactttgtatctaaggatgaaagtaggacaggtc |
251 |
Q |
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| T |
25265803 |
ttggccgaatttcttaatagaaattacttgttaatgaaacttattactaattaaagtagttagtagtactttgtatctaaggatgaaagtaggacaggtc |
25265704 |
T |
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| Q |
252 |
attttctagaggtcatca |
269 |
Q |
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| T |
25265703 |
attttctagaggtcatca |
25265686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 25265920 - 25265810
Alignment:
| Q |
15 |
gattattctatagttgtggtgatgcttgatgacaaaggatattaaattaagtttagttaagttagactttcttaatttatgtttgaatgttgtgatggaa |
114 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25265920 |
gattattctatagttgtggtgatgcttgaggacaaaggatattaaattaagtttagttaagttagactttcttaatttaagtttgaatgttgtgatggaa |
25265821 |
T |
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| Q |
115 |
caaatatagtt |
125 |
Q |
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| T |
25265820 |
caaatatagtt |
25265810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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