View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_high_40 (Length: 273)
Name: NF8889_high_40
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 7850443 - 7850683
Alignment:
| Q |
20 |
gttttctccttaatcttgtaggatgagtatcatcattattatctgtttcaacattgtcttcatcttcatgttcatttcctgatgactcactactgctatt |
119 |
Q |
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| T |
7850443 |
gttttctccttaatcttgtaggatgagtatcatcattattatctgtttcatcattgtcttcattttcatgttcactgcctgatgactgactactgctatt |
7850542 |
T |
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| Q |
120 |
aggagctattttaccaatttcttcatgaatttcttcattgtttacactatttccatcttcaccttcaattgctataacttctggtatggatttttcattc |
219 |
Q |
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| T |
7850543 |
aggagctatttcaccaatttcttcatgaatttcttcattgtttacactatttccatcttcaccttcaattgctataacttctggtatggatttttcattc |
7850642 |
T |
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| Q |
220 |
catttccaccctttgttctcttcaaataccacatctctgct |
260 |
Q |
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| T |
7850643 |
catttccaccctttgttctcttcaaataccacatctctgct |
7850683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 18959596 - 18959548
Alignment:
| Q |
151 |
tcttcattgtttacactatttccatcttcaccttcaattgctataactt |
199 |
Q |
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| T |
18959596 |
tcttcattgttttcaccattttcatcatcaccttcaattgttataactt |
18959548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 260
Target Start/End: Original strand, 46432194 - 46432414
Alignment:
| Q |
28 |
cttaatcttgtaggatgagtatcatcattattatctgtttcaacattgtcttcatcttcatgttcatttcctgatgactcactactgctattaggagcta |
127 |
Q |
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| T |
46432194 |
cttaatcttacaggaggtgtttcatcattattatctgtttcataattgtcctcatcttcatgttcactacttgaggcctcactgctgctattttcagcta |
46432293 |
T |
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| Q |
128 |
ttttaccaatttcttcatgaatttcttcattgtttacactatttccatcttcaccttcaattgctataacttctggtatggatttttcattccatttcca |
227 |
Q |
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||| |||||| |||| |||||||||||||||| |||||||| |||||||| | |||| ||||||| ||||||| |||||||||||||| |
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| T |
46432294 |
tttcaccaatatctt------------cattgtttacactattaccatcttctccttcaatagttatagcttctggagtggatttctcattccatttcca |
46432381 |
T |
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| Q |
228 |
ccctttgttctcttcaaataccacatctctgct |
260 |
Q |
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| T |
46432382 |
tcctttgttttcttcaaatacaacatctttgct |
46432414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 608078 - 608006
Alignment:
| Q |
149 |
tttcttcattgtttacactatttccatcttcaccttcaattgctataacttctggtatggatttttcattcca |
221 |
Q |
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| T |
608078 |
tttcttcattgtttccaccattttcatcatcaccttcaatagctataaattttgtattggatttttcattcca |
608006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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