View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_high_5 (Length: 683)

Name: NF8889_high_5
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_high_5
NF8889_high_5
[»] chr8 (1 HSPs)
chr8 (19-673)||(2097445-2098096)


Alignment Details
Target: chr8 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 19 - 673
Target Start/End: Original strand, 2097445 - 2098096
Alignment:
Q  19 ctgccagatgccactgcctcggcaagagttgcagcttcctcgtcacgaggtgcagctacaaataggttttgattttgatagttaatgtaaagaataacaa 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097445 ctgccagatgccactacctcggcaagagttgcagcttcctcgtcacgaggtgcagctacaaataggttttgattttgatagttaatgtaaagaataacaa 2097544  T
Q  119 agaaaacaatgagccataaggtcaaattgagtatagcaacaatgtttggtaaaatgattgtcaatgctgcgaaggacacagcacatgtaagaccgtacat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2097545 agaaaacaatgagccataaggtcaaattgagtatagcaacaatgtttggtaaaatgattgtcaacgctgcgaaggacacagcacatgtaagaccgtacat 2097644  T
Q  219 gagtgagattggaaacaaggtttcaatagtgatatgatctggtataagtaggatggaaaaaatccagagtaagaaaaatatcaaaactgcagctacaacc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2097645 gagtgagattggaaacaaggtttcaatagtgatatgatctggtataag---gatggaaaaaatccaaagtaagaaaaatatcaaaactgcagctacaacc 2097741  T
Q  319 caaggagtatactgttttgcgaatagcgtttcgccaatctttgtgaacttgagtgttaccaatgcaaccaaaagtgcaaacattttgtaaatgatgtctc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097742 caaggagtatactgttttgcgaatagcgtttcgccaatctttgtgaacttgagtgttaccaatgcaaccaaaagtgcaaacattttgtaaatgatgtctc 2097841  T
Q  419 ctaagtctttaatcacctctcccttgaagttgcatttcctcatttccgcctctcctcctatttattcaggtgtttgcatttcctcaatgatgataggatg 518  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2097842 ctaagcctttaatcacctctcccttgaagttgcatttcctcatttccgcctctcctcctattttttcaggtgtttgcatttcctcaatgatgataggatg 2097941  T
Q  519 gtaaaactgttgtatcttttcaatcatgatttcgtacttttatactagtacttctgtgtcgtcctccaattaaaaaacaaatactccattattagggtat 618  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2097942 gtaaaactgttgtatcttttcattcatgatttcgtacttttatactagtacttctgtgtcgtcctccaattataaaacaaatactccattattagggtat 2098041  T
Q  619 ctccaacccgtggtattacattaccaggaaagtcaccaacacgggaacaccaaac 673  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2098042 ctccaacccgtggtattacattacgaggaaagtcaccaacacgggaacaccaaac 2098096  T

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