View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_high_50 (Length: 245)
Name: NF8889_high_50
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_high_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 29521664 - 29521412
Alignment:
| Q |
9 |
ggacatcaacatcaagctttagcttaatatatcaagtgagactaaaataagtgcatgccaaaatcacatcgtcataataattttatcaaaattataaaat |
108 |
Q |
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| T |
29521664 |
ggacatcaacatcaagctttagcttaatatatcaagtgagactaaaataagtgcatgccaaaatcacatcgtcataataattttatcaaaattataaaat |
29521565 |
T |
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| Q |
109 |
ataacttttataaaaattgcattcacta--atttcgtgcaactcaccatcacttcaactatgctcttgtaagtatttcttagctcaac------------ |
194 |
Q |
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| T |
29521564 |
ataacttttataaaaattgcattcactatgatttcgtccaactcaccatcacttcaactatgctcttgtaagtattttttagctcaacatgtttgaattt |
29521465 |
T |
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| Q |
195 |
--attttaccaagtgtgactaccgacacgtcaaagcgcaacttccttcttttt |
245 |
Q |
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| T |
29521464 |
ctattttaccaagtgtgactaccgacacgtcaaagcgcaacttccttcttttt |
29521412 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 11412139 - 11412186
Alignment:
| Q |
18 |
catcaagctttagcttaatatatcaagtgagactaaaataagtgcatg |
65 |
Q |
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| T |
11412139 |
catcaagctttggctcaatataccaagtgagactaaaataagtgcatg |
11412186 |
T |
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