View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_high_54 (Length: 239)
Name: NF8889_high_54
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_high_54 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 14141305 - 14141084
Alignment:
| Q |
18 |
gttggaatcagtcgtattggaactcacactcttgccaatattgcaccatcaggatttcatttcattcccttaacttgattaattaatccacagatctata |
117 |
Q |
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| T |
14141305 |
gttggaatcagtcgtattggaactcacactcttgccaatattgcaccatcaggatttcatttcattcccttaacttgattaattaaaccacagatctaca |
14141206 |
T |
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| Q |
118 |
aaggaggatatttataaaattataattaaataaagttatatcctctcgtattctaattattttctattgtagtgcttgaagctgacaattgtcttctttg |
217 |
Q |
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| T |
14141205 |
aaggaggatatttataaaattaaaattaaataaagttatatcctcttgtattcttattattttctattgtagtgcttgaagctgaaaattgtcttctttg |
14141106 |
T |
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| Q |
218 |
ttgtgtctatattggctttttt |
239 |
Q |
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| T |
14141105 |
ttgtgtctatattggctttttt |
14141084 |
T |
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