View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_high_55 (Length: 235)
Name: NF8889_high_55
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_high_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 27608516 - 27608293
Alignment:
| Q |
11 |
gatggacatcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagnnnnnnn-atgcaaaaggaaact |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27608516 |
gatgcacatcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagttttatttatgcaaaaggaaact |
27608417 |
T |
|
| Q |
110 |
atgctg---gttacatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacatgtaattcttcnnnnnnntcagatggt |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27608416 |
atgctgctggttacatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacatgtaattcttcaaaaaaatcagatggt |
27608317 |
T |
|
| Q |
207 |
aacattgcagatgtctgtgctcct |
230 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
27608316 |
aacattgcagatgtctgtgttcct |
27608293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 34496968 - 34496749
Alignment:
| Q |
11 |
gatggacatcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagnnnnnnnatgcaaaaggaaacta |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34496968 |
gatgcacatcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagtttttttatgcaaaaggaaacta |
34496869 |
T |
|
| Q |
111 |
tgctggttacatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacatgtaattcttcnnnnnnntcagatggtaaca |
210 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
34496868 |
tgttggttacatccttctaggaaaaactaattttcattggattttccctttgctggttgaattaatacatgtaattcttcaaaaaaatccaatggtaaca |
34496769 |
T |
|
| Q |
211 |
ttgcagatgtctgtgctcct |
230 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
34496768 |
ttgcagatgtctgtgttcct |
34496749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 31505741 - 31505957
Alignment:
| Q |
11 |
gatggacatcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagnnnnnnnatgcaaaaggaaacta |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
31505741 |
gatgcacatcagctcaacggtgagaacatttccttgttacctagtgttaattgatgctttaaactattctattgtag-tctgttatgcaaaaggcaacta |
31505839 |
T |
|
| Q |
111 |
tgctggttacatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacatgtaattcttcnnnnnnntcagatggtaaca |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||||||||||||| |
|
|
| T |
31505840 |
tgctggttacatccttcta-gaaaaaccaattttcatttgattttccctttgtcggttgaattgatacacgtgattctt-ggtaaaatcagatggtaaca |
31505937 |
T |
|
| Q |
211 |
ttgcagatgtctgtgctcct |
230 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
31505938 |
ttgcagatgtctgtgttcct |
31505957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University