View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_10 (Length: 999)
Name: NF8889_low_10
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 310 - 797
Target Start/End: Complemental strand, 5150443 - 5149953
Alignment:
| Q |
310 |
cctcctattttcaattgggtaaagtgcaacactgatggtgcagctcatggaaatccaggtcttgcagcttgtgggggaatctttagaaattcagattctg |
409 |
Q |
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| T |
5150443 |
cctccaatttttaattgggttaagtgtaacactgacggggcagcgcagggtaatccgggcttggcagcttgtggaggaatttttagaaactcagatgcag |
5150344 |
T |
|
| Q |
410 |
acttcttaggggcgttctcaatcaaccttggagttacatctgcattgaattctaaacttataacagctatggtagcaatagagatagctcatatcaaaga |
509 |
Q |
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| T |
5150343 |
attttctaggagctttctccgttaacttgggagtctctactgctcttcactctgaacttatagcagctatggtagcaattgaaattgctcatgttaagaa |
5150244 |
T |
|
| Q |
510 |
atggcataacttatggttggaaactgattccatgttggtctttttggctttcaagtcttcaaaaattgttccttggtccttaaggaatagatgggataat |
609 |
Q |
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| T |
5150243 |
ctggcacaacctatggttggaaacggattccatgctagttttattggcgttcaagtcttctaaaatagtgccttggtctctaagaaataggtgggacaat |
5150144 |
T |
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| Q |
610 |
tgtttgtttctcttgtctaggtttaatttcaatgtctcgcatatatatcgggagggtaatcattgtgcagaccaactagctaatctaggcttaactt--- |
706 |
Q |
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||| | || | || |||| ||||||||| ||||| || || |||||| | || |||||| ||||||||| || || ||||| |||| ||||| | |
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| T |
5150143 |
tgtctattcattttatctatgtttaattttaatgtttctcacatatatagagaaggtaatagttgtgcagatcagcttgctaacttaggtttaaccttgc |
5150044 |
T |
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| Q |
707 |
cttcttattcttggttcaacaatgttcctccttaggtcaatgttgaatttgtaaggaataagactggatttcctaattataggttgtgcta |
797 |
Q |
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| T |
5150043 |
cttcttattcttggttcaacaatgtaccttctcaggttaatgttgaatttgtaaagaataagacaggttttcctaattttaggttttgcta |
5149953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 427 - 788
Target Start/End: Complemental strand, 26448735 - 26448371
Alignment:
| Q |
427 |
tcaatcaaccttggagttacatctgcattgaattctaaacttataacagctatggtagcaatagagatagctcatatcaaagaatggcataacttatggt |
526 |
Q |
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||||| || |||||| | || ||||| || || |||||| |||| |||||||||| || || || ||||| || ||||| | ||| ||||||||||| |
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| T |
26448735 |
tcaattaatcttggaatcacttctgctttaaactctaaatttattgcagctatggtggctattgaaatagcagatgtcaaaaattggattaacttatggt |
26448636 |
T |
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| Q |
527 |
tggaaactgattccatgttggtctttttggctttcaagtcttcaaaaattgttccttggtccttaaggaatagatgggataattgtttgtttctcttgtc |
626 |
Q |
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| T |
26448635 |
tggaattagactccatgcttgttttcttggcttttaaatcatctaagattgttccttggtctctaagaaacagatgggataattgtctctttcttttatg |
26448536 |
T |
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| Q |
627 |
taggtttaatttcaatgtctcgcatatatatcgggagggtaatcattgtgcagaccaactagctaatctaggcttaactt---cttcttattcttggttc |
723 |
Q |
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| T |
26448535 |
caggtttaactttaaggtctctcatatatatagggaaggcaatcattgtgcagatcaacttgtcaatttaggtctaactttgccttcttattcttggttc |
26448436 |
T |
|
| Q |
724 |
aacaatgttcctccttaggtcaatgttgaatttgtaaggaataagactggatttcctaattatag |
788 |
Q |
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| T |
26448435 |
aacactatacctcctcaggttaatgttgaatttgttaggaacaagacagactttccgaattatag |
26448371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 474 - 608
Target Start/End: Original strand, 16187149 - 16187283
Alignment:
| Q |
474 |
agctatggtagcaatagagatagctcatatcaaagaatggcata-acttatggttggaaactgattccatgttggtctttttggctttcaagtcttcaaa |
572 |
Q |
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| T |
16187149 |
agctatggtggcaattgagatagctcatatcaacaattggcatagactt-tggttagaaacagattcaatgttagtttttctagcttttaagtcttctaa |
16187247 |
T |
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| Q |
573 |
aattgttccttggtccttaaggaatagatgggataa |
608 |
Q |
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| T |
16187248 |
gattgttccttggagtttaaggaatagatgggataa |
16187283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 552 - 618
Target Start/End: Original strand, 6642917 - 6642983
Alignment:
| Q |
552 |
tttggctttcaagtcttcaaaaattgttccttggtccttaaggaatagatgggataattgtttgttt |
618 |
Q |
| |
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| T |
6642917 |
tttggccttcaagtctttaaaaatagttccttggcagttaagaaatagatgggaaaattgtctgttt |
6642983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 928 - 988
Target Start/End: Complemental strand, 14722044 - 14721984
Alignment:
| Q |
928 |
tgtaaagtgatgttcatagatggtcaaatttagtggggttagcaaaaatgttgatgtccat |
988 |
Q |
| |
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| T |
14722044 |
tgtaaagtgatgttcatagatggtcaaatttagtggggttagcaaaaatgttgatgtccat |
14721984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 928 - 980
Target Start/End: Original strand, 39465207 - 39465259
Alignment:
| Q |
928 |
tgtaaagtgatgttcatagatggtcaaatttagtggggttagcaaaaatgttg |
980 |
Q |
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|||||||| ||||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
39465207 |
tgtaaagtaatgttcatatatggtcagatttagtggagttagcaaaaatgttg |
39465259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 530 - 684
Target Start/End: Original strand, 37926825 - 37926979
Alignment:
| Q |
530 |
aaactgattccatgttggtctttttggctttcaagtcttcaaaaattgttccttggtccttaaggaatagatgggataattgtttgtttctcttgtctag |
629 |
Q |
| |
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||||||| |||||||| || || ||||| |||||||| | || || |||| ||||| | ||||||||||| |||||||||||| | | |||||||| |
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| T |
37926825 |
aaactgactccatgttagttttcttggcattcaagtcacctaagatagttcattggtgtcttaggaatagatgagataattgtttgcatattttgtctag |
37926924 |
T |
|
| Q |
630 |
gtttaatttcaatgtctcgcatatatatcgggagggtaatcattgtgcagaccaa |
684 |
Q |
| |
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|||| || |||| || ||||| ||| |||| |||||||||| |||||||||| |
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| T |
37926925 |
atttaggtttcatgtgtctcatatttatagggaaggtaatcattatgcagaccaa |
37926979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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