View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_101 (Length: 305)
Name: NF8889_low_101
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_101 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 42393855 - 42394110
Alignment:
| Q |
19 |
aagacgcaaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttca |
118 |
Q |
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| T |
42393855 |
aagacgctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttca |
42393954 |
T |
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| Q |
119 |
aattcaacnnnnnnnnnnnnnnntccttactttcactttcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaa |
218 |
Q |
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| T |
42393955 |
aattcaacaaaaactgcaaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaa |
42394054 |
T |
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| Q |
219 |
acgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagcca |
274 |
Q |
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| T |
42394055 |
acgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagcca |
42394110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 42378104 - 42378197
Alignment:
| Q |
183 |
tcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccaac |
276 |
Q |
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| T |
42378104 |
tcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattcatatctttcacaacaccctgcaaatcaaaccgggccaac |
42378197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 42377959 - 42378044
Alignment:
| Q |
41 |
aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaac |
126 |
Q |
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| T |
42377959 |
aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaac |
42378044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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